F17409

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F17409

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F17409

Determination of introduced cDNA(s)

  • RAFL09-63-N13 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-63-N13 - Resource: pdz88265

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL09-63-N13 - 5 prime EST 
    GATCTTCGTT GTCTCCGTTT AACGAACNTG GCGAATAACA AAGAGAGGAT 
    GAATTGTTCA ATCGGAAACT GGAAACACAC TGTTCTCTAC TTAACCCTAA 
    TCGTATCTCT TCTCTACTTC ATCGAATCCC TAATCTCACA CAAATTACAC 
    ATCAACTACA ACAAAATCCG CCTGAAAAGA TCTCCGAATC TTCCTCTACG 
    ATTCCGTGAC GATGGCACAT TCAAAATCCT CCAGGTCGCG GATATGCATT 
    TCGGAATGGG GATGATTACT CGATGTAGAG ATGTGTTGGA TTCAGAATTC 
    GAATATTGTT CTGATCTCAA CACTACTCGG NTTCTTCGTA GGATGATTGA 
    ATCTGAGAGA CCTGATTTGA TTGCTTTCAC TGGGGATANT ATATTTGGAT 
    CAAGT

    Gene models with high sequence identity

    1. AT5G57140.1 [+] show detail - purple acid phosphatase 28
      E-value: 0; Score: 99.26

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL09-63-N13 - 3 prime EST 
    GGTGTGGCCA TAATTTATTT ATTTTACTGG TAAACAAGGG GTACATTTAT 
    TGTGGACAGT AGAGAAAAGG TGAAAGAAGA AAGGCTTCGT GATGGGCAAA 
    CAAACGTAGG AGATCATAAA AATGAAAAGA GAGACATACA TTATTGTGAA 
    GAGAGAAGCC AAAATGAACC AAAAAAGGAA GAAAAAAAGT ATTATTAGTA 
    AAGAGAGTCG ATGCTCAAAG TAGGGGTTTG AGTTTCATTA TAAGCTCCTA 
    TTCCTGTTTC TATTTTTAAA CGGAACACCT CTTGTTCTTC TTCATCCGCC 
    TCAATAAAGA AAGTGTGGAA GATTATGCCA GAGAAAGAGG TGAGATTGGA 
    AGTGAGGATT TTGAGATTCA ATGAATCAAA GAATTCAAAC AGTTTCACCA 
    TTGTATTTGT CCTCTTATTA CATGTTACAC TCAC

    Gene models with high sequence identity

    1. AT5G57150.1 [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
      E-value: 0; Score: 97.00

    AT5G57140.1

    Model type
    Protein coding
    Short Description
    purple acid phosphatase 28
    Computational Description
    purple acid phosphatase 28 (PAP28); FUNCTIONS IN: protein serine/threonine phosphatase activity, acid phosphatase activity; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Phosphoesterase At2g46880 (InterPro:IPR011230); BEST Arabidopsis thaliana protein match is: purple acid phosphatase 29 (TAIR:AT5G63140.1); Has 678 Blast hits to 661 proteins in 227 species: Archae - 0; Bacteria - 324; Metazoa - 0; Fungi - 205; Plants - 115; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

    AT5G57150.1

    Model type
    Protein coding
    Short Description
    basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Computational Description
    basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G29930.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR