F17431

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F17431

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Original: F17431

Determination of introduced cDNA(s)

  • RAFL09-37-J06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-37-J06 - Resource: pda06162

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-37-J06 - full reading 
    AGAGACGGTG ATCGGGAAAT GTCGACGAAA GGCGCGGCGG CGGCGTACCC 
    TAGCGCGGCT CGGATATCTG ATTCTCCATG TTATCTTCAG TACTCTGCTT 
    CTCTCAAATG TCTTGAAGAA TTTGGATCAG ACAAGAGTAA ATGCCAGGAT 
    CATTTTGATG TGTACAAGGA ATGCAAGAAG AAAGAGAGGG AAGCTCGACT 
    GGAACGCAAT AAGACACGGT CGTTGTTCTC GTGAATGCAG ATCCTCGAAT 
    ACCAATGATG TCTCAGAACA TCACCTAGCT AGTAGTATCC TGTTGTTTCA 
    TTTGCAATGG CTGTGTTTGT ATGATCTATC TAAGTAAACA AGTGGAAAGT 
    GTTTGTTAAT GTTACTTTTT ACTCCCCATT GGTGAATCAT GGTGTATACC 
    TGTTAAACTT TGAGAGCAAG TGGTTATTTA TTTAGTTAGA GAAAAAAAAA 
    AAAAAAA

    Gene models with high sequence identity

    1. AT1G02160.1 [+] show detail - Cox19 family protein (CHCH motif)
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT1G02160.1

    Model type
    Protein coding
    Short Description
    Cox19 family protein (CHCH motif)
    Computational Description
    Cox19 family protein (CHCH motif); CONTAINS InterPro DOMAIN/s: CHCH (InterPro:IPR010625); Has 56 Blast hits to 56 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 34; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR