F17507

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F17507

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • increased height (PATO:0000570)
    (Adult plant::Plant height::tall)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F17507

Determination of introduced cDNA(s)

  • RAFL07-14-E01 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL07-14-E01 - Resource: pda04244

    full reading [+] show sequence

    Nucleotide sequence: RAFL07-14-E01 - full reading 
    AAAAAAAACA GAGAGAAAAA GACTAAAAAC ACAGTTTAAG AAGAAGGAGA 
    GATAGAGAGA GAAGAGAAAG ATAGAGAGGG AGATGGGGTC TCATATGGTT 
    TGGTTTCTAT TTCTTGTATC CTTCTTCTCT GTGTTCCCAG CTCCATCTGA 
    GAGCATGGTT CGCCACTACA AGTTTAACGT TGTAATGAAG AACGTGACTA 
    GATTATGCTC AAGCAAGCCA ACCGTGACCG TCAACGGTAG ATATCCAGGT 
    CCCACAATCT ACGCACGAGA AGATGACACG TTGCTCATCA AAGTCGTTAA 
    TCACGTCAAG TACAACGTCT CCATCCACTG GCACGGTGTG AGACAAGTGA 
    GAACGGGATG GGCTGATGGG CCTGCTTACA TAACTCAGTG CCCGATCCAG 
    CCTGGTCAAG TCTACACATA CAACTACACT TTGACCGGCC AACGCGGAAC 
    GCTCTGGTGG CACGCTCATA TCCTCTGGCT CCGAGCCACT GTTTACGGTG 
    CATTGGTCAT CCTTCCCAAA CGCGGTGTTC CCTATCCTTT CCCCAAACCC 
    GACAATGAGA AAGTCATCGT TCTAGGTGAA TGGTGGAAAT CGGATACTGA 
    AAATATTATT AATGAGGCGC TTAAGTCTGG ATTAGCCCCT AATGTCTCTG 
    ACTCTCACAT GATCAACGGA CACCCAGGCC CAGTTAGAAA CTGTCCATCT 
    CAAGGTTACA AACTGTCAGT AGAGAATGGC AAAACCTATC TGCTACGACT 
    AGTCAACGCT GCACTTAATG AAGAACTCTT TTTCAAAGTC GCCGGCCATA 
    TTTTCACGGT GGTAGAAGTA GACGCAGTCT ATGTTAAACC GTTCAAGACC 
    GACACCGTCC TTATAGCCCC CGGTCAAACC ACCAACGTCC TCCTAACCGC 
    CTCAAAATCC GCCGGGAAAT ACCTTGTAAC CGCTTCTCCT TTCATGGACG 
    CCCCAATCGC GGTGGACAAC GTAACCGCCA CCGCAACTGT TCATTACTCG 
    GGAACACTCT CCTCCTCCCC AACAATCCTC ACCCTTCCTC CCCCGCAAAA 
    CGCTACTTCC ATAGCCAACA ACTTCACAAA CTCTCTTCGT AGTCTCAACT 
    CCAAGAAGTA CCCTGCTCTT GTCCCGACCA CCATCGACCA CCACCTCTTC 
    TTCACCGTCG GCCTTGGGCT AAACGCATGC CCTACTTGCA AGGCCGGAAA 
    CGGAAGCCGT GTCGTGGCTA GCATCAACAA TGTAACCTTC ATTATGCCTA 
    AAACCGCTTT GCTCCCGGCT CATTACTTCA ACACAAGTGG AGTTTTCACG 
    ACAGACTTTC CCAAGAATCC ACCACACGTT TTCAACTACA GCGGAGGATC 
    AGTCACGAAC ATGGCCACAG AAACCGGCAC AAGGCTCTAC AAGCTACCGT 
    ATAACGCCAC TGTTCAGCTT GTCCTTCAAG ATACCGGCGT CATAGCGCCA 
    GAGAACCATC CAGTACATCT TCACGGTTTT AACTTTTTTG AAGTCGGTCG 
    TGGATTAGGT AACTTCAACT CCACGAAAGA CCCAAAAAAC TTCAATTTGG 
    TAGATCCGGT TGAGAGGAAC ACAATCGGAG TTCCATCCGG TGGATGGGTC 
    GTCATCAGAT TCAGAGCAGA TAATCCCGGG GTTTGGTTCA TGCATTGTCA 
    CTTGGAGGTA CACACGACGT GGGGATTAAA GATGGCTTTC TTGGTGGAGA 
    ACGGCAAAGG ACCCAATCAG TCGATTTTGC CGCCGCCTAA GGATCTTCCC 
    AAGTGCTAAG TCCTGCAACT AAATAGGGCG ACATATCAAC ATCACGCCAC 
    GTCCAAGAAG ACTAATGAGT GGTGATTTAA TGCGTGGATT TGGCTAACAA 
    ATTGTATTTT TTTGAGCAAA GCAAAAGGTT CGGTTTTTTT TGCTCATGTC 
    AAAAGTTTGA ATAATGGAGA AAAAAGAGCA TTGTATT

    Gene models with high sequence identity

    1. AT2G38080.1 [+] show detail - Laccase/Diphenol oxidase family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Multicopper oxidase, copper-binding site 0
    PatternScan Multicopper oxidase, copper-binding site 0
    superfamily Cupredoxin 7.5e-47
    superfamily Cupredoxin 2.9e-46
    superfamily Cupredoxin 2.9e-43
    HMMTigr Laccase 0
    HMMPfam Multicopper oxidase, type 3 1.3e-42
    HMMPfam Multicopper oxidase, type 1 9.6e-42
    HMMPfam Multicopper oxidase, type 2 4.1e-38
    HMMPanther LACCASE 0
    HMMPanther MULTI-COPPER OXIDASE 0
    Gene3D Cupredoxin 1.4e-41
    Gene3D Cupredoxin 1.1e-48
    Gene3D Cupredoxin 3.5e-59

    See the detailed result >

    AT2G38080.1

    Model type
    Protein coding
    Short Description
    Laccase/Diphenol oxidase family protein
    Curator Summary
    Encodes a protein with similarity to putative laccase, a member of laccase family (17 members in Arabidopsis). Might be involved in cell wall biosynthesis. Mutants have a mild irregular xylem phenotype.
    Computational Description
    IRREGULAR XYLEM 12 (IRX12); FUNCTIONS IN: laccase activity; INVOLVED IN: secondary cell wall biogenesis; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 10 (TAIR:AT5G01190.1); Has 9472 Blast hits to 8326 proteins in 1422 species: Archae - 45; Bacteria - 3703; Metazoa - 467; Fungi - 3359; Plants - 1600; Viruses - 0; Other Eukaryotes - 298 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR