F17523

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F17523

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F17523

Determination of introduced cDNA(s)

  • RAFL05-10-D20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-10-D20 - Resource: pda17042

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-10-D20 - full reading 
    CCCCGATCTG AAAATCCAAT CGACGTCGTA TTCCAAGAAA ATAGAAAAGT 
    AGGATCATGG TGGCGATGAT CATGGCTTCA AGGTTTAACC GGGAAGCTAA 
    GCTCGCATCT CAAATCTTGT CTACACTTTT GGGAAACCGA AGCTGCTACA 
    CATCCATGGC CGCCACATCT TCCTCTGCTT TACTTCTTAA TCCGTTGACT 
    TCTTCTTCTT CTTCTTCTAC TCTCCGTCGT TTCAGATGCT CGCCAGAGAT 
    CTCTTCTCTC TCCTTCTCCT CCGCTTCTGA TTTCTCTCTA GCGATGAAGA 
    GGCAGAGTCG GAGTTTTGCT GATGGTTCGG AACGAGATCC GTCTGTTGTG 
    TGTGAGGCTG TTAAGCGCGA GACTGGACCT GATGGACTCA ACATCGCTGA 
    CAATGTGTCT CAGCTCATTG GGAAAACTCC TATGGTGTAC TTGAACAGTA 
    TAGCAAAAGG TTGTGTAGCA AATATTGCTG CCAAACTCGA GATCATGGAG 
    CCATGTTGCA GTGTCAAGGA TAGGATTGGG TACAGTATGG TTACTGATGC 
    TGAGCAAAAA GGATTTATAT CACCTGGAAA GAGTGTTCTT GTGGAACCTA 
    CAAGTGGAAA CACGGGTATT GGCCTAGCAT TCATCGCTGC TTCAAGGGGC 
    TATAGACTTA TCTTGACAAT GCCAGCATCC ATGAGTATGG AAAGAAGGGT 
    TCTTTTAAAG GCATTTGGAG CTGAGCTTGT ATTAACAGAT CCTGCTAAAG 
    GCATGACTGG AGCGGTTCAG AAGGCTGAAG AGATCTTGAA AAACACTCCT 
    GATGCATACA TGCTCCAACA GTTTGACAAC CCTGCAAATC CAAAGATTCA 
    TTACGAGACT ACTGGTCCTG AGATCTGGGA TGATACAAAG GGCAAGGTGG 
    ATATCTTTGT TGCAGGAATT GGAACTGGTG GAACTATCAC TGGTGTTGGT 
    CGATTTATTA AAGAGAAAAA TCCCAAAACG CAGGTTATTG GTGTAGAACC 
    CACCGAAAGC GATATACTTT CTGGTGGCAA ACCGGGACCT CACAAGATTC 
    AAGGAATTGG AGCTGGATTT ATACCTAAGA ATTTGGATCA GAAAATTATG 
    GATGAAGTCA TAGCGATTTC AAGTGAGGAA GCTATAGAAA CCGCAAAGCA 
    ACTAGCTCTT AAGGAAGGCT TGATGGTTGG TATATCATCT GGAGCTGCAG 
    CTGCTGCTGC AATCAAGGTG GCTAAGAGAC CTGAGAATGC TGGAAAACTC 
    ATAGCTGTTG TTTTCCCGAG CTTCGGGGAG AGATATCTAT CGACCCCGCT 
    GTTCCAGTCT ATCCGGGAAG AGGTGGAGAA AATGCAGCCT GAGGTATGAA 
    CATTAGCAAC TTGGTCTACT TCTGCAAAGC TCTTTCTCCC ATAATTACAG 
    TCTGAGTGCT AAGCAATTTA TTTTTATCAA TAAGGCATTA GTGAATGTGG 
    TTTGAGTTCT ATTTTGGATA TCCAACACTA GTCTATGTTT TACTCAACAT 
    TTTCTGTTGG AAATCCCAAT GCTTAATTAT ATTGATAAAA AAAA

    Gene models with high sequence identity

    1. AT3G59760.3 [+] show detail - O-acetylserine (thiol) lyase isoform C
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Cysteine synthase K/M 7.2e-208
    HMMTigr Cysteine synthase A 1.4e-215
    superfamily Pyridoxal phosphate-dependent enzyme, beta subunit 5e-93
    Gene3D no description 1.8e-69
    PatternScan Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site 0
    HMMPanther CYSTEINE SYNTHASE 2.6e-150
    HMMPanther SER/THR DEHYDRATASE, TRP SYNTHASE 2.6e-150
    HMMPfam Pyridoxal phosphate-dependent enzyme, beta subunit 1.6e-59
    Coil coiled-coil 0

    See the detailed result >

    AT3G59760.3

    Model type
    Protein coding
    Short Description
    O-acetylserine (thiol) lyase isoform C
    Curator Summary
    Arabidopsis thaliana O-acetylserine (thiol) lyase (OAS-TL) isoform oasC
    Computational Description
    O-acetylserine (thiol) lyase isoform C (OASC); FUNCTIONS IN: protein binding, cysteine synthase activity, zinc ion binding, ATP binding; INVOLVED IN: cysteine biosynthetic process, pollen tube development; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site (InterPro:IPR001216), Cysteine synthase A (InterPro:IPR005859), Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926), Cysteine synthase K/M (InterPro:IPR005856); BEST Arabidopsis thaliana protein match is: O-acetylserine (thiol) lyase B (TAIR:AT2G43750.2); Has 22643 Blast hits to 22626 proteins in 2678 species: Archae - 432; Bacteria - 15847; Metazoa - 414; Fungi - 670; Plants - 570; Viruses - 2; Other Eukaryotes - 4708 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR