F17540

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F17540

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F17540

Determination of introduced cDNA(s)

  • RAFL08-15-N16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL08-15-N16 - Resource: pda04871

    full reading [+] show sequence

    Nucleotide sequence: RAFL08-15-N16 - full reading 
    GGCCAATCAT AGAACAAGAA GTAGAGAAAG CAGAAGATAC ACTACAGAGA 
    CAGAGAGAGA TCTTGACAAG ATGGGTAAAG CAAGAGGAGT GAACAATGGC 
    GTGAATGAAA GTTCTCTCGG TTATCTTTTT GGTTCCGGCC AGCCTTCTTC 
    CGCTGCTGCT GCCACAATGG GGACTACTAC TACTACAACC ACCACAACTA 
    CCACCGATGG GACCGGAGGC AGACCGATAA CCACCACGAC GACCACAGTC 
    ACTGATAACA AGAAGACATC TGCAGGTGTT AGAGGAAGTC CTAATAATTA 
    CTTCAGATCA GAAGGCCAAA ACTGTGGAAA CTTTCTCACG GACAGGCCAT 
    CTACTAAGGT TCATGCAGCT CCTGGTGGAG GATCTTCTCT TGATTATCTG 
    TTTGGAGGAC CAAGTCCTGC TGGATCTGGA AACAAATGAA GTTACTTGTA 
    GTTTTTTTCC CACTATTCAG ATTCGTGTAA ATCATCAAAA GTGTTGGCTT 
    TTATCCCTTA GTGAACCCTG TGTGATTCAA TTGTGATGTT TGCCTTTTGT 
    TAAAAAAAAA AAAAAAA

    Gene models with high sequence identity

    1. AT3G02180.1 [+] show detail - SPIRAL1-like3
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT3G02180.1

    Model type
    Protein coding
    Short Description
    SPIRAL1-like3
    Curator Summary
    SPIRAL1-LIKE3 belongs to a six-member gene family in Arabidopsis; all members share high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root, leaf and petal growth as a result of defective anisotropic cell expansion.
    Computational Description
    SPIRAL1-like3 (SP1L3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: SPIRAL1-like4 (TAIR:AT5G15600.1); Has 418 Blast hits to 329 proteins in 68 species: Archae - 2; Bacteria - 13; Metazoa - 50; Fungi - 15; Plants - 147; Viruses - 0; Other Eukaryotes - 191 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR