F17637

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F17637

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F17637

Determination of introduced cDNA(s)

  • RAFL07-16-J11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL07-16-J11 - Resource: pda04356

    full reading [+] show sequence

    Nucleotide sequence: RAFL07-16-J11 - full reading
    TGAGTCACAC AAAGAGTAAA GAAGAACAAT GGCTTCCTCT ATGCTCTCTT 
    CCGCTACTAT GGTTGCCTCT CCGGCTCAGG CCACTATGGT CGCTCCTTTC
    AACGGACTTA AGTCCTCCGC TGCCTTCCCA GCCACCCGCA AGGCTAACAA
    CGACATTACT TCCATCACAA GCAACGGCGG AAGAGTTAAC TGCATGCAGG
    TGTGGCCTCC GATTGGAAAG AAGAAGTTTG AGACTCTCTC TTACCTTCCT
    GACCTTACCG ATTCCGAATT GGCTAAGGAA GTTGACTACC TTATCCGCAA
    CAAGTGGATT CCTTGTGTTG AATTCGAGTT GGAGCACGGA TTTGTGTACC
    GTGAGCACGG TAACTCACCC GGATACTATG ATGGACGGTA CTGGACAATG
    TGGAAGCTTC CCTTGTTCGG TTGCACCGAC TCCGCTCAAG TGTTGAAGGA
    AGTGGAAGAG TGCAAGAAGG AGTACCCCAA TGCCTTCATT AGGATCATCG
    GATTCGACAA CACCCGTCAA GTCCAGTGCA TCAGTTTCAT TGCCTACAAG
    CCACCAAGCT TCACCGGTTA ATTTCCCTTT GCTTTTGTGT AAACCTCAAA
    ACTTTATCCC CCATCTTTGA TTTTATCCCT TGTTTTTCTG CTTTTTTCTT
    CTTTCTTGGG TTTTAATTTC CGGACTTAAC GTTTGTTTTC CGGTTTGCGA
    GACATATTCT ATCGGATTCT CAACTGTCTG ATGAAATAAA TATGTAATGT
    TCTATAAGTC AAAAAAAAAA AAAAAAGAGC TCTTGGATCC GAGAGAGAGA
    GCTCTGGAAC GATATTAACA TATATCATGA AGAAAAAGAT TGAAGTATTG
    ATATGGGAAT AACTAAAACT TCTCCTAATA CTACAATTCT CTTGAAGACT
    TTTCACAATA ATTCTATGTC CCAAGATTAT CATCATCATC ATCATCATAA
    TCAACACCAA GGAGGTATCT TCAACTTCTC TAATGGATTC GACCGATCAG
    ATTCTCCCAA TTTAACAACT CAGCAGAAGC AAGAGCATCA AAGGGTAGAG
    ATGGACGAGG AATCTTCAGT CGCCGGAGGT AGGATTCCGG TCTACGAATC
    AGCCGGTATG TTATCCGAAA TGTTTAATTT CCCCGGAAGC AGCGGTGGAG
    GAAGAGATCT CGACCTCGGC CAATCTTTCC GGTCAAATAG GCAGTTGCTT
    GAGGAGCAAC ATCAGAATAT TCCGGCTATG AATGCTACGG ATTCAGCCAC
    CGCCACCGCA GCCGCCATGC AGTTATTCTT GATGAATCCA CCGCCACCGC
    AACAACCACC GTCTCCGTCA TCCACAACTT CCCCAAGGAG CCACCACAAT
    TCTTCAACTC TTCACATGTT ACTTCCAAGT CCATCCACCA ACACAACTCA
    CCATCAGAAC TACACTAATC ATATGTCTAT GCATCAGCTT CCACATCAGC
    ATCACCAGCA GATATCGACG TGGCAGTCTT CTCCCGATCA TCATCATCAT
    CATCACAACA GCCAAACGGA GATTGGGACC GTCCACGTGG AAAACAGCGG
    AGGACACGGA GGACAAGGCT TGTCCTTATC TCTCTCATCG TCTTTAGAGG
    CTGCAGCAAA AGCGGAAGAG TATAGAAACA TTTACTACGG AGCCAATTCT
    TCTAACGCAT CACCTCATCA TCAATACAAT CAATTCAAGA CTCTTCTTGC
    TAATTCTTCT CAACATCACC ATCAAGTATT AAACCAATTC CGATCATCTC
    CGGCTGCTTC TTCCTCTTCC ATGGCAGCGG TCAATATCTT AAGAAACTCG
    AGGTACACAA CGGCCGCGCA AGAGTTGTTG GAAGAGTTTT GTAGTGTTGG
    AAGAGGATTT TTGAAGAAGA ACAAACTTGG GAACAGCTCA AACCCTAATA
    CTTGCGGTGG TGATGGTGGT GGCAGCTCTC CTTCGTCGGC CGGAGCAAAC
    AAGGAGCATC CTCCTTTATC GGCGTCTGAT CGGATTGAGC ATCAAAGAAG
    GAAAGTGAAA CTACTCACCA TGCTTGAAGA GGTGGACCGA CGGTACAACC
    ATTACTGCGA GCAAATGCAG ATGGTTGTGA ACTCTTTCGA CATAGTAATG
    GGCCACGGTG CGGCATTACC GTACACCGCA TTGGCTCAAA AAGCTATGTC
    AAGACATTTT AGATGCCTTA AAGATGCAGT TGCGGCTCAG CTTAAGCAGA
    GTTGCGAACT TCTTGGGGAC AAAGATGCAG CGGGAATCTC TTCTTCCGGG
    TTAACAAAAG GTGAAACTCC GCGTTTGCGT TTGCTAGAGC AAAGTTTGCG
    TCAGCAACGT GCGTTTCATC AAATGGGTAT GATGGAACAA GAAGCTTGGC
    GGCCACAACG CGGTTTGCCT GAACGCTCCG TCAATATACT TAGAGCTTGG
    CTCTTCGAAC ATTTCCTTCA CCCGTATCCA AGTGATGCAG ATAAACACCT
    ATTGGCTCGA CAGACTGGTT TATCCAGAAA TCAGGTATCA AATTGGTTCA
    TAAATGCTAG GGTTCGTTTA TGGAAACCAA TGGTGGAAGA AATGTACCAA
    CAAGAATCAA AAGAAAGAGA AAGAGAAGAG GAATTAGAAG AGAACGAAGA
    AGATCAAGAA ACAAAAAACA GCAACGACGA CAAGAGCACA AAATCCAACA
    ACAATGAAAG CAACTTCACT GCCGTTCGGA CCACTTCACA AACTCCAACG
    ACAACCGCAC CAGACGCATC AGACGCAGAC GCAGCAGTAG CGACAGGCCA
    CCGTCTAAGA TCCAACATTA ATGCTTACGA AAACGACGCT TCATCACTTC
    TACTCCCTTC CTCTTATTCC AACGCCGCCG CTCCTGCCGC TGTTTCTGAC
    GACTTGAATT CTCGTTACGG TGGCTCAGAC GCGTTTTCCG CCGTTGCCAC
    GTGTCAACAA AGTGTAGGTG GGTTCGATGA TGCTGACATG GATGGTGTTA
    ACGTTATAAG GTTTGGGACA AACCCTACTG GTGACGTGTC TCTCACGCTT
    GGTTTACGCC ACGCTGGAAA CATGCCTGAC AAAGACGCTT CTTTCTGCGT
    TAGAGAGTTT GGGGGTTTTT AGTTTGCTTT TGTCACTCCA TTTAATTAAT
    TAATTATAGT TTTCCATTCT TACTTATTTT AATTGAAAAT CTATTTTTGT
    CTCTTAAAAG TC

    Gene models with high sequence identity

    1. AT4G36870.2 [+] show detail - BEL1-like homeodomain 2
      E-value: 0; Score: 99.87

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Homeobox 12.568
    HMMPanther BEL1 HOMEOTIC PROTEIN 5.6e-90
    HMMPanther HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 5.6e-90
    FPrintScan Ribulose bisphosphate carboxylase, small chain 2.6e-75
    FPrintScan Ribulose bisphosphate carboxylase, small chain 2.6e-75
    FPrintScan Ribulose bisphosphate carboxylase, small chain 2.6e-75
    FPrintScan Ribulose bisphosphate carboxylase, small chain 2.6e-75
    FPrintScan Ribulose bisphosphate carboxylase, small chain 2.6e-75
    FPrintScan Ribulose bisphosphate carboxylase, small chain 2.6e-75
    HMMSmart POX 3e-82
    HMMSmart Homeobox 1.2e-09
    HMMPfam POX 9.9e-52
    HMMPfam Homeobox 6.5e-07
    HMMPfam Ribulose bisphosphate carboxylase, small chain 6.7e-42
    HMMPfam RbcS 2.6e-19
    superfamily Homeodomain-like 3.5e-17
    superfamily Ribulose bisphosphate carboxylase, small chain 5.5e-54
    Coil coiled-coil 0
    Coil coiled-coil 0
    Gene3D Homeodomain-related 9.1e-25
    Gene3D Ribulose bisphosphate carboxylase, small chain 6.5e-56

    See the detailed result >

    AT4G36870.2

    Model type
    Protein coding
    Short Description
    BEL1-like homeodomain 2
    Curator Summary
    Encodes a member of the BEL family of homeodomain proteins. Plants doubly mutant for saw1/saw2 (blh2/blh4) have serrated leaves. BP is expressed in the serrated leaves, therefore saw1/saw1 may act redundantly to repress BP in leaves.
    Computational Description
    BEL1-like homeodomain 2 (BLH2); CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), POX (InterPro:IPR006563), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: BEL1-like homeodomain 4 (TAIR:AT2G23760.3); Has 5744 Blast hits to 5713 proteins in 356 species: Archae - 0; Bacteria - 3; Metazoa - 2532; Fungi - 390; Plants - 2517; Viruses - 0; Other Eukaryotes - 302 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR