F17637

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F17637

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F17637

Determination of introduced cDNA(s)

  • RAFL07-16-J11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL07-16-J11 - Resource: pda04356

    full reading [+] show sequence

    Nucleotide sequence: RAFL07-16-J11 - full reading 
    TGAGTCACAC AAAGAGTAAA GAAGAACAAT GGCTTCCTCT ATGCTCTCTT 
    CCGCTACTAT GGTTGCCTCT CCGGCTCAGG CCACTATGGT CGCTCCTTTC 
    AACGGACTTA AGTCCTCCGC TGCCTTCCCA GCCACCCGCA AGGCTAACAA 
    CGACATTACT TCCATCACAA GCAACGGCGG AAGAGTTAAC TGCATGCAGG 
    TGTGGCCTCC GATTGGAAAG AAGAAGTTTG AGACTCTCTC TTACCTTCCT 
    GACCTTACCG ATTCCGAATT GGCTAAGGAA GTTGACTACC TTATCCGCAA 
    CAAGTGGATT CCTTGTGTTG AATTCGAGTT GGAGCACGGA TTTGTGTACC 
    GTGAGCACGG TAACTCACCC GGATACTATG ATGGACGGTA CTGGACAATG 
    TGGAAGCTTC CCTTGTTCGG TTGCACCGAC TCCGCTCAAG TGTTGAAGGA 
    AGTGGAAGAG TGCAAGAAGG AGTACCCCAA TGCCTTCATT AGGATCATCG 
    GATTCGACAA CACCCGTCAA GTCCAGTGCA TCAGTTTCAT TGCCTACAAG 
    CCACCAAGCT TCACCGGTTA ATTTCCCTTT GCTTTTGTGT AAACCTCAAA 
    ACTTTATCCC CCATCTTTGA TTTTATCCCT TGTTTTTCTG CTTTTTTCTT 
    CTTTCTTGGG TTTTAATTTC CGGACTTAAC GTTTGTTTTC CGGTTTGCGA 
    GACATATTCT ATCGGATTCT CAACTGTCTG ATGAAATAAA TATGTAATGT 
    TCTATAAGTC AAAAAAAAAA AAAAAAGAGC TCTTGGATCC GAGAGAGAGA 
    GCTCTGGAAC GATATTAACA TATATCATGA AGAAAAAGAT TGAAGTATTG 
    ATATGGGAAT AACTAAAACT TCTCCTAATA CTACAATTCT CTTGAAGACT 
    TTTCACAATA ATTCTATGTC CCAAGATTAT CATCATCATC ATCATCATAA 
    TCAACACCAA GGAGGTATCT TCAACTTCTC TAATGGATTC GACCGATCAG 
    ATTCTCCCAA TTTAACAACT CAGCAGAAGC AAGAGCATCA AAGGGTAGAG 
    ATGGACGAGG AATCTTCAGT CGCCGGAGGT AGGATTCCGG TCTACGAATC 
    AGCCGGTATG TTATCCGAAA TGTTTAATTT CCCCGGAAGC AGCGGTGGAG 
    GAAGAGATCT CGACCTCGGC CAATCTTTCC GGTCAAATAG GCAGTTGCTT 
    GAGGAGCAAC ATCAGAATAT TCCGGCTATG AATGCTACGG ATTCAGCCAC 
    CGCCACCGCA GCCGCCATGC AGTTATTCTT GATGAATCCA CCGCCACCGC 
    AACAACCACC GTCTCCGTCA TCCACAACTT CCCCAAGGAG CCACCACAAT 
    TCTTCAACTC TTCACATGTT ACTTCCAAGT CCATCCACCA ACACAACTCA 
    CCATCAGAAC TACACTAATC ATATGTCTAT GCATCAGCTT CCACATCAGC 
    ATCACCAGCA GATATCGACG TGGCAGTCTT CTCCCGATCA TCATCATCAT 
    CATCACAACA GCCAAACGGA GATTGGGACC GTCCACGTGG AAAACAGCGG 
    AGGACACGGA GGACAAGGCT TGTCCTTATC TCTCTCATCG TCTTTAGAGG 
    CTGCAGCAAA AGCGGAAGAG TATAGAAACA TTTACTACGG AGCCAATTCT 
    TCTAACGCAT CACCTCATCA TCAATACAAT CAATTCAAGA CTCTTCTTGC 
    TAATTCTTCT CAACATCACC ATCAAGTATT AAACCAATTC CGATCATCTC 
    CGGCTGCTTC TTCCTCTTCC ATGGCAGCGG TCAATATCTT AAGAAACTCG 
    AGGTACACAA CGGCCGCGCA AGAGTTGTTG GAAGAGTTTT GTAGTGTTGG 
    AAGAGGATTT TTGAAGAAGA ACAAACTTGG GAACAGCTCA AACCCTAATA 
    CTTGCGGTGG TGATGGTGGT GGCAGCTCTC CTTCGTCGGC CGGAGCAAAC 
    AAGGAGCATC CTCCTTTATC GGCGTCTGAT CGGATTGAGC ATCAAAGAAG 
    GAAAGTGAAA CTACTCACCA TGCTTGAAGA GGTGGACCGA CGGTACAACC 
    ATTACTGCGA GCAAATGCAG ATGGTTGTGA ACTCTTTCGA CATAGTAATG 
    GGCCACGGTG CGGCATTACC GTACACCGCA TTGGCTCAAA AAGCTATGTC 
    AAGACATTTT AGATGCCTTA AAGATGCAGT TGCGGCTCAG CTTAAGCAGA 
    GTTGCGAACT TCTTGGGGAC AAAGATGCAG CGGGAATCTC TTCTTCCGGG 
    TTAACAAAAG GTGAAACTCC GCGTTTGCGT TTGCTAGAGC AAAGTTTGCG 
    TCAGCAACGT GCGTTTCATC AAATGGGTAT GATGGAACAA GAAGCTTGGC 
    GGCCACAACG CGGTTTGCCT GAACGCTCCG TCAATATACT TAGAGCTTGG 
    CTCTTCGAAC ATTTCCTTCA CCCGTATCCA AGTGATGCAG ATAAACACCT 
    ATTGGCTCGA CAGACTGGTT TATCCAGAAA TCAGGTATCA AATTGGTTCA 
    TAAATGCTAG GGTTCGTTTA TGGAAACCAA TGGTGGAAGA AATGTACCAA 
    CAAGAATCAA AAGAAAGAGA AAGAGAAGAG GAATTAGAAG AGAACGAAGA 
    AGATCAAGAA ACAAAAAACA GCAACGACGA CAAGAGCACA AAATCCAACA 
    ACAATGAAAG CAACTTCACT GCCGTTCGGA CCACTTCACA AACTCCAACG 
    ACAACCGCAC CAGACGCATC AGACGCAGAC GCAGCAGTAG CGACAGGCCA 
    CCGTCTAAGA TCCAACATTA ATGCTTACGA AAACGACGCT TCATCACTTC 
    TACTCCCTTC CTCTTATTCC AACGCCGCCG CTCCTGCCGC TGTTTCTGAC 
    GACTTGAATT CTCGTTACGG TGGCTCAGAC GCGTTTTCCG CCGTTGCCAC 
    GTGTCAACAA AGTGTAGGTG GGTTCGATGA TGCTGACATG GATGGTGTTA 
    ACGTTATAAG GTTTGGGACA AACCCTACTG GTGACGTGTC TCTCACGCTT 
    GGTTTACGCC ACGCTGGAAA CATGCCTGAC AAAGACGCTT CTTTCTGCGT 
    TAGAGAGTTT GGGGGTTTTT AGTTTGCTTT TGTCACTCCA TTTAATTAAT 
    TAATTATAGT TTTCCATTCT TACTTATTTT AATTGAAAAT CTATTTTTGT 
    CTCTTAAAAG TC

    Gene models with high sequence identity

    1. AT4G36870.2 [+] show detail - BEL1-like homeodomain 2
      E-value: 0; Score: 99.87

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Homeobox 12.568
    HMMPanther BEL1 HOMEOTIC PROTEIN 5.6e-90
    HMMPanther HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 5.6e-90
    FPrintScan Ribulose bisphosphate carboxylase, small chain 2.6e-75
    FPrintScan Ribulose bisphosphate carboxylase, small chain 2.6e-75
    FPrintScan Ribulose bisphosphate carboxylase, small chain 2.6e-75
    FPrintScan Ribulose bisphosphate carboxylase, small chain 2.6e-75
    FPrintScan Ribulose bisphosphate carboxylase, small chain 2.6e-75
    FPrintScan Ribulose bisphosphate carboxylase, small chain 2.6e-75
    HMMSmart POX 3e-82
    HMMSmart Homeobox 0.0000000012
    HMMPfam POX 9.9e-52
    HMMPfam Homeobox 0.00000065
    HMMPfam Ribulose bisphosphate carboxylase, small chain 6.7e-42
    HMMPfam RbcS 2.6e-19
    superfamily Homeodomain-like 3.5e-17
    superfamily Ribulose bisphosphate carboxylase, small chain 5.5e-54
    Coil coiled-coil 0
    Coil coiled-coil 0
    Gene3D Homeodomain-related 9.1e-25
    Gene3D Ribulose bisphosphate carboxylase, small chain 6.5e-56

    See the detailed result >

    AT4G36870.2

    Model type
    Protein coding
    Short Description
    BEL1-like homeodomain 2
    Curator Summary
    Encodes a member of the BEL family of homeodomain proteins. Plants doubly mutant for saw1/saw2 (blh2/blh4) have serrated leaves. BP is expressed in the serrated leaves, therefore saw1/saw1 may act redundantly to repress BP in leaves.
    Computational Description
    BEL1-like homeodomain 2 (BLH2); CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), POX (InterPro:IPR006563), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: BEL1-like homeodomain 4 (TAIR:AT2G23760.3); Has 5744 Blast hits to 5713 proteins in 356 species: Archae - 0; Bacteria - 3; Metazoa - 2532; Fungi - 390; Plants - 2517; Viruses - 0; Other Eukaryotes - 302 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR