F17705

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F17705

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F17705

Determination of introduced cDNA(s)

  • RAFL05-18-G15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-18-G15 - Resource: pda01332

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-18-G15 - full reading 
    CTCTCAAACT CAAATCAACC TTCTTCCATT TTTCAAATTA CAAACATACA 
    CAACAACAAC AAAACCTCTT ACTCACTCCA ATGGCTCGCC TTCTCTTTCG 
    TCTTCTCGTA GAATCCAACA CTCCGTCTCC GGCGATTGAT AACTCCACCG 
    CCGCGTTGAA TTCTGATCTC GTCGTCATCC TCGCTGCTCT CCTCTGCGCC 
    TTGATTTGCG TTCTCGGCTT AATCGCCGTT TCTCGATGTG TCTGGCTCCG 
    TCGTCTCGCA GCCGGAAACA GAACAGTCTC CGGATCTCAA ACTCAATCTC 
    CTCAACCTCC GGTGGCAGCG GCGAACAAAG GCCTGAAGAA GAAAGTCCTT 
    CAATCTCTCC CGAAGCTTAC GTTCTCGCCA GAGTCACCTG AGTCGGAGAA 
    ATTCGCAGAG TGCGCGATCT GTCTAGCTGA ATTCTCTGCC GGCGACGAGC 
    TCCGAGTTTT ACCGCAGTGT GGTCACGGGT TCCACGTGGC TTGCATTGAC 
    ACGTGGCTAG GATCTCACTC GTCTTGCCCT TCTTGCCGTC AGATCTTGGT 
    TGTTGCCAGG TGTCACAAGT GTGGAGGTTT ACCCGGTAGC TCTAGCTCCG 
    GACTTGAATC CGAACCCGAA ATCGAGATCC GAATCAAGCA AGGCGAAGAT 
    GACCCCAACT CCTTCTTGCC ATAATCATTT TAGTTTCCCA TTTATTTATT 
    AGAAAACTCT ATAATTTAAT GCAGATCATT TTAGTGGGAT AGTGTTTAGT 
    CTCTTGATGT ACATGGTTTA TTGTAATTTG TAAATGTTGT ATGAATTGGA 
    AAATTTAACG ATTTGTGTAT TTGAACCTTT TATTACTTTG TGTTTATCAA 
    AAACAATTGC TGAATAAAAA AAAAAAAAAA A

    Gene models with high sequence identity

    1. AT1G20823.1 [+] show detail - RING/U-box superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Zinc finger, C3HC4 RING-type 4.4e-07
    Gene3D no description 1.6e-14
    superfamily RING/U-box 5.4e-16
    ProfileScan Zinc finger, RING-type 12.548
    HMMSmart Zinc finger, RING-type 4.4e-08
    HMMPanther gb def: T7N9.7 1.4e-24
    HMMPanther RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW D 1.4e-24

    See the detailed result >

    AT1G20823.1

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G76410.1); Has 9063 Blast hits to 9039 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 2341; Fungi - 637; Plants - 4964; Viruses - 26; Other Eukaryotes - 1095 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR