F17710

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F17710

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F17710

Determination of introduced cDNA(s)

  • RAFL09-65-A14 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-65-A14 - Resource: pda08606

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-65-A14 - full reading 
    ATGTTGTGTC ATTCTCTTTT CTTCAAGTCG GCAAAAGTAT CACAATGTTA 
    AACATCTTAC CGTTTTTCTT GTTCTTTCTT CCGTTTCTCA TCGGAAACAA 
    CCGCATTTGC GTCGCCGTAA AGACAGGCTT TGTCGGGAGA AACGGCACGC 
    AGTTCGTGTT GAACGGAGAA CAAGTTTACT TAAACGGCTT CAATGCTTAT 
    TGGATGATGA CCACCGCGGC TGACACGGCA TCTAAAGGAA GAGCTACCGT 
    CACGACGGCG CTCCGGCAAG CCTCCGCGGT GGGAATGAAC GTCGCTAGGA 
    TTTGGGGTTT CAACGAAGGA GATTACATTC CTCTTCAGAT CTCTCCTGGC 
    TCCTATAGTG AAGACGTTTT CAAGGGGCTA GACTTTGTCG TCTATGAAGC 
    TGGACGATTT AATATTAAAT TGATAATTAG TTTAGTCAAT AATTTCGAAG 
    ACTATGGAGG GAGAAAAAAG TACGTGGAAT GGGCCGGTTT AGATGAACCG 
    GATGAATTCT ACACAAACTC AGCTGTCAAG CAATTCTACA AGAATCACGT 
    GAAGACCGTG TTGACGAGGA AAAACACAAT CACTGGTCGA ATGTACAAAG 
    ATGACCCTAC CATCTTCTCA TGGGAACTCA TCAACGAACC TCGCTGCAAT 
    GATTCCACTG CTTCGAATAT TCTTCAGGAT TGGGTGAAGG AAATGGCTAG 
    TTATGTTAAG TCCATAGACT CAAACCATTT GCTGGAAATA GGGCTTGAAG 
    GGTTCTACGG AGAATCTATA CCGGAAAGAA CGGTTTACAA TCCCGGCGGA 
    AGGGTCTTAA CCGGTACAGA TTTCATCACC AATAACCAAA TTCCGGATAT 
    CGATTTCGCC ACTATCCATA TCTACCCGGA TTCTTGGCTA CCATTACAGA 
    GCTCAAGAAC AGGAGAACAA GATACATTTG TGGACAGATG GATCGGAGCA 
    CATATTGAAG ACTGTGACAA TATCATCAAG AAGCCTTTGC TGATAACAGA 
    GTTTGGGAAA TCTTCAAAGT ACCCTGGTTT TAGCTTAGAG AAACGGAACA 
    AGTTTTTCCA AAGAGTTTAC GATGTTATCT ACGACAGTGC AAGGGCTGGT 
    GGTTCGTGTA CTGGTGGTGT TTTCTGGCAG CTTACGACCA ATAGAACTGG 
    TCTGTTAGGT GATGGGTACG AGGTCTTTAT GCAAGCAGGT CCTAATACTA 
    CTGCTCAGCT TATCGCCGAC CAATCTAGTA AACTGAAAAA CCTCAAGTAT 
    CCACCGTTGG TCACACATAG TGCAGAATGA AACAGTATAG ATACAAACAG 
    TAGATATTAG AATGTAAAAA TAGGAAACAT GTATAGTTGA ATATGAACAA 
    AAGCTAAATG ATATGTAGAA TAGTTGAATG T

    Gene models with high sequence identity

    1. AT1G02310.1 [+] show detail - Glycosyl hydrolase superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Glycoside hydrolase, catalytic core 3.1e-90
    Gene3D Glycoside hydrolase, subgroup, catalytic core 6.5e-129
    HMMPfam Glycoside hydrolase, family 5 7.4e-14

    See the detailed result >

    AT1G02310.1

    Model type
    Protein coding
    Short Description
    Glycosyl hydrolase superfamily protein
    Computational Description
    Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 5 (InterPro:IPR001547), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT5G66460.1); Has 762 Blast hits to 752 proteins in 193 species: Archae - 9; Bacteria - 223; Metazoa - 4; Fungi - 190; Plants - 306; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR