F17748

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F17748

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F17748

Determination of introduced cDNA(s)

  • RAFL06-11-B16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-11-B16 - Resource: pdz87579

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL06-11-B16 - 5 prime EST
    GACTCGTCTG CCTTCTTCCG CATCTCTTTT CATTTCTCTC TGATTTCTCG 
    ATCTCTCCGT CCAACTATGT CTGCCTTCAC AAGCAAATTC GCCGATGAGT
    TGATCGCCAA CGCTGCCTAC ATCGGCACAC CTGGAAAAGG TATTTTGGCT
    GCTGATGAGT CCACTGGTAC CATTGGAAAG CGTCTTGCGA GCATCAACGT
    CGAGAACGTT GAGACCAACA GACGTAACCT CCGTGAGCTT CTCTTCACCG
    CCCCTGGTGC TCTTCCATGC CTCAGTGGTG TCATCCTTTT CGAAGAGACT
    CTGTACCAAA AGAGTTCCGA TGGTAAGCTT TTCGTTGATA TCTTGAAGGA
    AGGAGGAGTT CTTCCCGGTA TCAAGGTTGA CAAGGGTACC GTTGAGCTAG
    CTGGAACCGA CGGTGAGACC ACCACTCAAG GTCTTGACGG TCTCGGTGAC
    AGATGCAAGA AGTACTACGA AGCTGGTGCT CGTTTCGCCA AGTGGCGTGC
    AGTCCTCAAG ATCGGAGAGA ACGAGCCATC TGAGCATTCC ATTCATGAGA
    ACGCTTACNG ATTAGCTAGA TACGCTGTTA TCTGCCAAGA GAACGGTCTT
    GTACCAATTG TCGAGCCTGA GATCCTAGTC GATGGATCCC ATGACATNCA
    NAAGTGTGCT G

    Gene models with high sequence identity

    1. AT3G52930.1 [+] show detail - Aldolase superfamily protein
      E-value: 0; Score: 99.55

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL06-11-B16 - 3 prime EST
    CAAATTCCAC AAGAGGTTCA ACAGAAATAA CCTCAAATGA CTTTTTTATT 
    TGGGCAGTGT TTTTAAAATA CTCAATTCTA AAAAACAAAA CCCAATCAAA
    ATCAAAACAC AAATCCAAAA GGAAAATGAA GAAAAAACAC TTATAATCCG
    ATAATGTCAA GTAGAAAAAC GAAAAATCCC TAGAAATATA TCCAGGAAGA
    TGACAAACGT CACAATTCAA CCCGTGGACG ATGCTCAGTA CTTGTAATCC
    TTCACGTGAA GGCTCTCAGC TGCTCCATCA CCAAGCTTAG CGTCACCCTT
    GTAGGTTCCG AGTGTGGCTT CAGAGTTAGC CTTGCACCTC ACATACAACG
    CCTCTTGAGC TGCCTTGACA TTCTCCTCTT TACCTGCCCA TGTCTTCAAG
    GTAGACTGCT GCAACGCACG TCCGAATGAG AAAGACAATG ACCATGGCTT
    CTTGGTCTTC AACTGGTTCA TGGCGTTCAA GTTCCTGGTA GCTTCTTCCT
    CGCTCTGTCC TCCAGATAAG AAGACAATGG CTGGAACAGC TGCTGGGACG
    GTTCTCTGAA GGGCACGGAC GGTGTGCTCA GCGATGACTT CAGGTGAAAC
    CTTGGGGCTG TCAGATCC

    Gene models with high sequence identity

    1. AT3G52930.1 [+] show detail - Aldolase superfamily protein
      E-value: 0; Score: 99.84

    AT3G52930.1

    Model type
    Protein coding
    Short Description
    Aldolase superfamily protein
    Computational Description
    Aldolase superfamily protein; FUNCTIONS IN: copper ion binding; INVOLVED IN: response to cadmium ion, response to karrikin, response to salt stress, pentose-phosphate shunt; LOCATED IN: in 8 components; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Fructose-bisphosphate aldolase, class-I (InterPro:IPR000741); BEST Arabidopsis thaliana protein match is: Aldolase superfamily protein (TAIR:AT2G36460.1); Has 5003 Blast hits to 4997 proteins in 974 species: Archae - 0; Bacteria - 709; Metazoa - 1414; Fungi - 8; Plants - 477; Viruses - 0; Other Eukaryotes - 2395 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR