F17809

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F17809

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)
flower (PO:0009046)
  • abnormal (PATO:0000460)
    (Flower::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • dark green (PATO:0001249)
    (Cauline leaf::Color::dark)
  • dark green (PATO:0001249)
    (Cauline leaf::Color::dark)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F17809

Determination of introduced cDNA(s)

  • RAFL05-19-N16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-19-N16 - Resource: pda07450

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-19-N16 - full reading 
    ATAATTCGAG CTCTCTTGAA GCAAAAAGCT ATCCGCCGTC GACTCGAGCT 
    TCGTTCGTCT CTCTGCAAAT ATGGCGACAG CGTATCAACC AATGAAACCA 
    GGAAAGGCTG GTTTGGAAGA GCCACTCGAG CAGATTCACA AGATCAGGAT 
    TACTCTCTCC TCCAAGAATG TCAAGAACCT TGAGAAAGTG TGCACTGATT 
    TGGTTCGTGG AGCTAAGGAC AAGAGACTTA GAGTCAAGGG ACCAGTGAGA 
    ATGCCCACTA AGGTTCTCAA GATCACTACC CGAAAAGCTC CCTGTGGTGA 
    AGGAACCAAT ACATGGGACA GATTTGAACT TAGGGTGCAC AAGCGAGTGA 
    TTGATCTCTT CAGCTCTCCT GATGTGGTCA AGCAAATCAC ATCCATCACC 
    ATTGAACCTG GTGTTGAGGT TGAGGTCACC ATCGCCGACT CGTAGATCGA 
    CTCTCTTACT TCTGTTTTTG CTCTTTCTCT TTTAAGAAAC AAATGTTTTG 
    TTGTACTGAA ACTCAAGTTC TTTTGTTTTC TTAATTGAAT AGATTTTGAA 
    GATTGATATT ATAATTATGT TCTCTACTCT CATATTAATA GCCTTAAACA 
    AAAAAAAAAA AAAAA

    Gene models with high sequence identity

    1. AT3G45030.1 [+] show detail - Ribosomal protein S10p/S20e family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Ribosomal protein S10, eukaryotic/archaeal 1.7e-53
    HMMPanther 40S RIBOSOMAL PROTEIN S20 1.3e-78
    HMMPanther Ribosomal protein S10 1.3e-78
    HMMPfam Ribosomal protein S10 2.3e-30
    superfamily Ribosomal protein S10 8.7e-29
    FPrintScan Ribosomal protein S10 9e-14
    FPrintScan Ribosomal protein S10 9e-14
    FPrintScan Ribosomal protein S10 9e-14
    PatternScan Ribosomal protein S10, conserved site 0
    Gene3D Ribosomal protein S10 1.4e-29

    See the detailed result >

    AT3G45030.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein S10p/S20e family protein
    Computational Description
    Ribosomal protein S10p/S20e family protein; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, small ribosomal subunit; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Ribosomal protein S10, conserved site (InterPro:IPR018268), Ribosomal protein S10, eukaryotic/archaeal (InterPro:IPR005729), Ribosomal protein S10 (InterPro:IPR001848); BEST Arabidopsis thaliana protein match is: Ribosomal protein S10p/S20e family protein (TAIR:AT5G62300.2); Has 7518 Blast hits to 7518 proteins in 2618 species: Archae - 271; Bacteria - 4774; Metazoa - 380; Fungi - 145; Plants - 182; Viruses - 0; Other Eukaryotes - 1766 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR