F17817

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F17817

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
T2  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F17817

Determination of introduced cDNA(s)

  • RAFL04-17-D16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-17-D16 - Resource: pda00659

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-17-D16 - full reading 
    ATTGTTAAAA GCTCTCACAC AACCACCGTT CTCCGTCACG GTGGCGCTTT 
    ATTCTCTCAT CGGAGCGCCT CACCGGTGGC AGACGGTGTC GTTGTTCCTC 
    TCCTAAAACC TCCATCAATC ACCATCTCTT TACACAGAGC TCTAACCAAA 
    ATCTTCGAGA GATGGGGCAG AGTATGAGCT GTGGAAGTCG ACCGGAGCAC 
    GGAATATTCG CCTCTGTACA GTGCGGCGAT ATCATCACTA TCCGTCGTGT 
    GATGGCGACG GAGCCTAGTC TGTTGAATCA AACTACTCCT TATGATCGTC 
    ACTCTGTTCT TCATGTCGCT GCTGCTAATG GTCAGATCGA GATTTTGTCA 
    TTGCTTTTGG AACGATTTAC GAATCCAGAT TTGTTGAATC GTCACAAGCA 
    GACTCCGTTA ATGTTGGCTG CGATGTATGG AAGAATCTCT TGTGTGAAGA 
    AGCTAGCTGA AGTTGGAGCT AATATTTTGA TGTTTGATTC TGTGAATCGA 
    AGAACATGTT TGCATTACGC TGCTTATTAT GGACATGCTA ATTGTGTTCA 
    AGCTATTCTC TCTGCTGCTC AATCAAGTCC TGTTGCTGTC CATTGGGGAT 
    ATGCGAGATT TGTGAACATA AGAGATGATA AAGGAGCGAC TCCGTTGCAT 
    TTAGCTGCTC GACAGAGACG ACCTGAATGT GTGAATGTTT TGTTGGATAG 
    TGGTTCTCTT GTTTGTGCAT CTACTAGTGT ATATGGTTCT CCAGGAAGCA 
    CACCTCTTCA TTTAGCAGCT AGAAGTGGAT CTATAGATTG TGTCAGAAAG 
    TTGCTTGCTT GGGGTGCTGA TCGTCTTCAA CGAGACGCTT CTGGGAGAAT 
    ACCTTATGTG GTTGCGATGA AGCATAAGCA TGGAGCATGT GGAGCCTTAC 
    TTAATCCGTC CTCTGCAGAG CCACTTGTTT GGCCATCACC ATTAAAGTTC 
    ATCAGTGAGC TTAATGACGA GGCGAAACTT CTCTTAGAGC AGGCTTTAAT 
    GGAGGCTAAC AGGGAGAGAG AGAAAACCAT CCTCAAAGGA ACAGCTTATT 
    CCTTACCATC ACCCTCTTTC TCTGACACGG ATGATAACAT GTCCGAGGTG 
    AGTGATACGG AACTGTGCTG CATTTGCTTT GAGCAAGTAT GTACAATTGA 
    AGTTAAAGAC TGTGGTCACC AAATGTGTGC ACAATGCACA CTTGCACTGT 
    GCTGTCACAA CAAACCAAAC CCAACGACCT CAACCGTGAC TCCACCGGTC 
    TGTCCGTTCT GTAGAAGCAC CATTGCATGT TTAGTCGTCG CCCAGAACAA 
    CAACAACAAC AACGAAAAGA GCAAAAGCCT AGATGATGTT GTTGTTGTTG 
    ATCGTGAGGC AGGTGATGTT AGCTCCTCCA AATTCAGAAA ACATAGAAGA 
    TCAATAAACC TTGGCGAAGA AAGCAGCAGC TTCATGGGAC TATCAACTAT 
    TGGATCATTC GGTAGGATAA CCGGCCGTGG CTCGGGAAGG ATCGCAGCCG 
    AAAACGAGCT GATGGACAAA CCAATATTGT GAGGGATCGA TTCCGTTTTA 
    AGGGACATTT TGGGGCATGG GGGAGCAATA AAAAAGATGA GGGGATGAAA 
    TTGTGAGAAT GTATAAAATA TAGATGAATT TATGTTAGAT CTTTTGTTGA 
    AGGGAGGAAG ATTGAAATAA GGAAAAAGAT GTGGGGAGGT GTGTAATGCA 
    AGGATTTGTT GTTTCTTTGA TTAAGTTTGG CCAAAATTGT TTGTTGTTGT 
    TATTATTTGG TTACTTGATA TGAAAGGGAA ACC

    Gene models with high sequence identity

    1. AT2G28840.1 [+] show detail - XB3 ortholog 1 in Arabidopsis thaliana
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Ankyrin repeat 0.0032
    HMMSmart Ankyrin repeat 0.00082
    HMMSmart Ankyrin repeat 0.0035
    HMMSmart Ankyrin repeat 0.003
    HMMSmart Ankyrin repeat 0.049
    Coil coiled-coil 0
    superfamily Ankyrin repeat-containing domain 7.8e-55
    superfamily RING/U-box 0.000000011
    ProfileScan Ankyrin repeat 10.286
    ProfileScan Ankyrin repeat 10.392
    ProfileScan Ankyrin repeat 11.14
    ProfileScan Ankyrin repeat 12.876
    ProfileScan Zinc finger, RING-type 9.48
    ProfileScan Ankyrin repeat-containing domain 40.903
    HMMPanther RECEPTOR-LIKE KINASE XA21-BINDING PROTEIN 3 2.7e-250
    HMMPanther ANKYRIN REPEAT-CONTAINING 2.7e-250
    Gene3D Ankyrin repeat-containing domain 1.7e-45
    HMMPfam Ankyrin repeat 0.000031
    HMMPfam Ankyrin repeat 0.000098
    HMMPfam Ankyrin repeat 0.000014
    HMMPfam Ankyrin repeat 0.00000031

    See the detailed result >

    AT2G28840.1

    Model type
    Protein coding
    Short Description
    XB3 ortholog 1 in Arabidopsis thaliana
    Computational Description
    XB3 ortholog 1 in Arabidopsis thaliana (XBAT31); FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 3 in Arabidopsis thaliana (TAIR:AT5G07270.1); Has 52906 Blast hits to 22710 proteins in 954 species: Archae - 64; Bacteria - 3597; Metazoa - 29466; Fungi - 4564; Plants - 3287; Viruses - 345; Other Eukaryotes - 11583 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR