F17817

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) increased width (PATO:0000600) (Rosette leaf::Shape::wide) present in greater numbers in organism (PATO:0000470) (Rosette leaf::Number::many)
T2
	cauline leaf (PO:0000013)	abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	increased width (PATO:0000600) (Rosette leaf::Shape::wide) present in greater numbers in organism (PATO:0000470) (Rosette leaf::Number::many)
	fruit (PO:0009001)	abnormal (PATO:0000460) (Silique::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F17817

Determination of introduced cDNA(s)

RAFL04-17-D16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-17-D16 - Resource: pda00659

full reading [+] show sequence

ATTGTTAAAA GCTCTCACAC AACCACCGTT CTCCGTCACG GTGGCGCTTT 
ATTCTCTCAT CGGAGCGCCT CACCGGTGGC AGACGGTGTC GTTGTTCCTC 
TCCTAAAACC TCCATCAATC ACCATCTCTT TACACAGAGC TCTAACCAAA 
ATCTTCGAGA GATGGGGCAG AGTATGAGCT GTGGAAGTCG ACCGGAGCAC 
GGAATATTCG CCTCTGTACA GTGCGGCGAT ATCATCACTA TCCGTCGTGT 
GATGGCGACG GAGCCTAGTC TGTTGAATCA AACTACTCCT TATGATCGTC 
ACTCTGTTCT TCATGTCGCT GCTGCTAATG GTCAGATCGA GATTTTGTCA 
TTGCTTTTGG AACGATTTAC GAATCCAGAT TTGTTGAATC GTCACAAGCA 
GACTCCGTTA ATGTTGGCTG CGATGTATGG AAGAATCTCT TGTGTGAAGA 
AGCTAGCTGA AGTTGGAGCT AATATTTTGA TGTTTGATTC TGTGAATCGA 
AGAACATGTT TGCATTACGC TGCTTATTAT GGACATGCTA ATTGTGTTCA 
AGCTATTCTC TCTGCTGCTC AATCAAGTCC TGTTGCTGTC CATTGGGGAT 
ATGCGAGATT TGTGAACATA AGAGATGATA AAGGAGCGAC TCCGTTGCAT 
TTAGCTGCTC GACAGAGACG ACCTGAATGT GTGAATGTTT TGTTGGATAG 
TGGTTCTCTT GTTTGTGCAT CTACTAGTGT ATATGGTTCT CCAGGAAGCA 
CACCTCTTCA TTTAGCAGCT AGAAGTGGAT CTATAGATTG TGTCAGAAAG 
TTGCTTGCTT GGGGTGCTGA TCGTCTTCAA CGAGACGCTT CTGGGAGAAT 
ACCTTATGTG GTTGCGATGA AGCATAAGCA TGGAGCATGT GGAGCCTTAC 
TTAATCCGTC CTCTGCAGAG CCACTTGTTT GGCCATCACC ATTAAAGTTC 
ATCAGTGAGC TTAATGACGA GGCGAAACTT CTCTTAGAGC AGGCTTTAAT 
GGAGGCTAAC AGGGAGAGAG AGAAAACCAT CCTCAAAGGA ACAGCTTATT 
CCTTACCATC ACCCTCTTTC TCTGACACGG ATGATAACAT GTCCGAGGTG 
AGTGATACGG AACTGTGCTG CATTTGCTTT GAGCAAGTAT GTACAATTGA 
AGTTAAAGAC TGTGGTCACC AAATGTGTGC ACAATGCACA CTTGCACTGT 
GCTGTCACAA CAAACCAAAC CCAACGACCT CAACCGTGAC TCCACCGGTC 
TGTCCGTTCT GTAGAAGCAC CATTGCATGT TTAGTCGTCG CCCAGAACAA 
CAACAACAAC AACGAAAAGA GCAAAAGCCT AGATGATGTT GTTGTTGTTG 
ATCGTGAGGC AGGTGATGTT AGCTCCTCCA AATTCAGAAA ACATAGAAGA 
TCAATAAACC TTGGCGAAGA AAGCAGCAGC TTCATGGGAC TATCAACTAT 
TGGATCATTC GGTAGGATAA CCGGCCGTGG CTCGGGAAGG ATCGCAGCCG 
AAAACGAGCT GATGGACAAA CCAATATTGT GAGGGATCGA TTCCGTTTTA 
AGGGACATTT TGGGGCATGG GGGAGCAATA AAAAAGATGA GGGGATGAAA 
TTGTGAGAAT GTATAAAATA TAGATGAATT TATGTTAGAT CTTTTGTTGA 
AGGGAGGAAG ATTGAAATAA GGAAAAAGAT GTGGGGAGGT GTGTAATGCA 
AGGATTTGTT GTTTCTTTGA TTAAGTTTGG CCAAAATTGT TTGTTGTTGT 
TATTATTTGG TTACTTGATA TGAAAGGGAA ACC

Gene models with high sequence identity

AT2G28840.1 [+] show detail - XB3 ortholog 1 in Arabidopsis thaliana
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMSmart	Ankyrin repeat	0.0032
HMMSmart	Ankyrin repeat	0.00082
HMMSmart	Ankyrin repeat	0.0035
HMMSmart	Ankyrin repeat	0.003
HMMSmart	Ankyrin repeat	0.049
Coil	coiled-coil	0
superfamily	Ankyrin repeat-containing domain	7.8e-55
superfamily	RING/U-box	1.1e-08
ProfileScan	Ankyrin repeat	10.286
ProfileScan	Ankyrin repeat	10.392
ProfileScan	Ankyrin repeat	11.14
ProfileScan	Ankyrin repeat	12.876
ProfileScan	Zinc finger, RING-type	9.48
ProfileScan	Ankyrin repeat-containing domain	40.903
HMMPanther	RECEPTOR-LIKE KINASE XA21-BINDING PROTEIN 3	2.7e-250
HMMPanther	ANKYRIN REPEAT-CONTAINING	2.7e-250
Gene3D	Ankyrin repeat-containing domain	1.7e-45
HMMPfam	Ankyrin repeat	3.1e-05
HMMPfam	Ankyrin repeat	9.8e-05
HMMPfam	Ankyrin repeat	1.4e-05
HMMPfam	Ankyrin repeat	3.1e-07

See the detailed result >

AT2G28840.1

Model type: Protein coding
Short Description: XB3 ortholog 1 in Arabidopsis thaliana
Computational Description: XB3 ortholog 1 in Arabidopsis thaliana (XBAT31); FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 3 in Arabidopsis thaliana (TAIR:AT5G07270.1); Has 52906 Blast hits to 22710 proteins in 954 species: Archae - 64; Bacteria - 3597; Metazoa - 29466; Fungi - 4564; Plants - 3287; Viruses - 345; Other Eukaryotes - 11583 (source: NCBI BLink).
Link: InterPro Scan - TAIR