F17820

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F17820

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F17820

Determination of introduced cDNA(s)

  • RAFL09-87-E13 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-87-E13 - Resource: pda17881

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-87-E13 - full reading 
    GACAATCACA TGGCCTTTTC AAAAAATCAA TCTTTTAGTT CTCTATCGAT 
    GCGTAGGCTT GAAGCATGAT GACGACAGTC GCCGCCGATC TCCACCGTTA 
    TCTTTTCCTG ATTACCGTTT TTCTTTTCTT CCTCTGCGAC AAAACCTCTC 
    TTGCTCTGAC CACAGACGGT GTTCTTCTTC TCTCTTTCCG TTACTCAATC 
    GTTGACGATC CTCTTTACGT TTTTCGGAGC TGGAGATTCG ACGACGAGAC 
    TCCTTGCTCT TGGCGTGGTG TCACGTGCGA TGCATCTTCC CGGCACGTGA 
    CTGTTCTGTC ACTTCCAAGC TCGAACCTTA CCGGCACACT ACCTTCAAAT 
    TTGGGTTCAC TCAATTCACT TCAAAGACTT GATCTTTCCA ACAATTCCAT 
    CAATGGGTCT TTCCCGGTTT CGCTTCTCAA CGCGACGGAG CTTCGATTTC 
    TTGATCTGTC CGATAATCAC ATCTCCGGTG CACTACCGGC GAGTTTTGGC 
    GCGCTTTCGA ACCTCCAAGT GTTGAATCTC TCCGATAATT CCTTCGTCGG 
    CGAATTACCG AACACATTAG GATGGAACCG GAACTTAACG GAGATTTCAC 
    TTCAGAAAAA CTATTTATCC GGCGGGATTC CGGGAGGTTT TAAGTCGACG 
    GAGTATCTTG ATCTCTCGTC AAATTTGATC AAAGGCTCGT TGCCGTCACA 
    TTTCAGAGGG AATCGTCTAC GCTATTTCAA CGCTTCGTAC AACAGAATCT 
    CCGGCGAGAT TCCGTCAGGT TTCGCCGACG AAATCCCGGA AGACGCCACC 
    GTTGATCTCT CATTCAACCA ACTTACAGGT CAAATCCCGG GTTTTCGGGT 
    TCTCGATAAC CAAGAATCCA ACTCTTTCTC CGGTAACCCG GGTCTCTGCG 
    GATCCGACCA TGCAAAACAC CCTTGTCGTG ACGGTGAAGC AACCTCTCCA 
    CCTCCATCGC CGACTCCAAA TTCTCCTCCT GCATTAGCTG CTATACCAAA 
    TACTATTGGC TTAACCAATC ACCCAATTAG CTCCAAAACC GGTCCGAAAT 
    CAAAATGGGA TCATAAACCG GTGCTTATCA TTGGCATTGT TGTCGGTGAC 
    TTAGCCGGTT TAGCAATCCT CGGGATTGTG TTTTTCTACA TTTACCAGTC 
    GAGAAAACGG AAGACCGTAA CGGCTACGTC AAAATGGTCC ACGTCATCAA 
    CAGATTCCAA GGTCTCAAAA TGGTACTGTT TACGCAAATC CGTTTACGTT 
    GACGGTGACT GCGAAGAAGA AGAAGAGGAA TCTGAGACAT CGGAATCCGA 
    ATCCGACGAA GAGAACCCGG TCGGACCAAA TCGACGGTCA GGATTAGACG 
    ATCAAGAAAA AAAGGGAACG TTAGTGAATC TCGATTCAGA GAAAGAGCTT 
    GAAATCGAAA CGCTTCTCAA AGCATCAGCT TATATTTTGG GAGCCACCGG 
    TTCGAGCATA ATGTATAAAG CGGTGCTTCA AGACGGAACA GCTGTGGCGG 
    TTCGACGAAT AGCTGAATGC GGTTTAGACC GGTTTAGAGA TTTCGAAGCT 
    CAGGTTCGAG CCGTGGCTAA GTTAATACAT CCAAACCTGG TACGAATTCG 
    CGGTTTCTAT TGGGGATCCG ACGAGAAACT TGTCATTTAC GATTTTGTCC 
    CTAACGGCAG CCTCGCTAAC GCCCGTTACC GGAAAGTGGG CTCCTCTCCT 
    TGTCATTTAC CTTGGGACGC TCGGCTCAAG ATAGCAAAAG GCATAGCTCG 
    CGGGCTAACA TACGTACACG ACAAGAAGTA CGTGCATGGT AACCTCAAGC 
    CTAGCAATAT CCTTTTGGGC TTAGATATGG AGCCTAAAGT TGCGGATTTC 
    GGTCTTGAGA AGCTTTTGAT TGGGGACATG AGTTATAGAA CCGGTGGATC 
    GGCTCCAATA TTCGGAAGCA AGAGATCCAC AACGTCTCTT GAGTTTGGGC 
    CGAGTCCAAG CCCAAGTCCA AGTTCAGTCG GGTTACCCTA CAATGCTCCA 
    GAATCTCTTC GGAGTATTAA GCCGAATTCG AAATGGGATG TGTACTCGTT 
    CGGAGTTATT CTGCTTGAGC TACTAACGGG AAAGATCGTG GTGGTCGACG 
    AGCTTGGACA GGTTAATGGG CTTGTGATTG ATGACGGTGA GCGGGCAATT 
    CGGATGGCGG ACTCTGCTAT ACGGGCTGAG TTAGAAGGCA AAGAAGAAGC 
    TGTGTTGGCA TGTTTGAAAA TGGGCCTAGC TTGTGCGTCT CCAATACCAC 
    AGAGAAGGCC CAATATCAAA GAGGCTTTGC AAGTTCTCGA GAGATTCCCT 
    GTTCATTCTA GTCAACAGTA ATGATAATAA TTAAGACCAA GAAAGAGTTA 
    AATAACTTGA CTGTGTGTAC TTAGAGTTAG ATTGATAGGC AAGTTTGATC 
    TTAAAAAAAA AA

    Gene models with high sequence identity

    1. AT5G67280.1 [+] show detail - receptor-like kinase
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Toll-like receptor, leucine rich repeat-containing 9.7e-05
    FPrintScan Toll-like receptor, leucine rich repeat-containing 9.7e-05
    ProfileScan Protein kinase, catalytic domain 27.665
    superfamily L domain-like 4.9e-59
    superfamily Protein kinase-like domain 1.1e-50
    HMMPanther RECEPTOR-LIKE PROTEIN KINASE 3.8e-171
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 3.8e-171
    HMMPfam Serine/threonine-protein kinase-like domain 1.8e-27
    HMMPfam Leucine-rich repeat 0.054
    HMMPfam Leucine-rich repeat 0.067
    HMMPfam Leucine-rich repeat 0.1
    HMMPfam Leucine-rich repeat-containing N-terminal domain, type 2 1.6e-10
    HMMSmart Leucine-rich repeat, typical subtype 51
    HMMSmart Leucine-rich repeat, typical subtype 100
    HMMSmart Leucine-rich repeat, typical subtype 11
    HMMSmart Serine/threonine-protein kinase domain 2.5e-11
    HMMSmart Tyrosine-protein kinase, catalytic domain 3.9e-09
    Gene3D no description 5.1e-57
    Gene3D no description 6.5e-09
    Gene3D no description 1.9e-35

    See the detailed result >

    AT5G67280.1

    Model type
    Protein coding
    Short Description
    receptor-like kinase
    Computational Description
    receptor-like kinase (RLK); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT4G37250.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR