F17838

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F17838

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F17838

Determination of introduced cDNA(s)

  • RAFL06-12-O04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-12-O04 - Resource: pda17192

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-12-O04 - full reading 
    GATAGACTTA ACATTTCATA TAGAGAAACT TGAAACAACA ATCTGAGCAA 
    AGAGCGTTTT ATCTTGTTGA TTTTGGAATC TCCATTACGA TGGAAGGTGC 
    GGCTGATCAA ACTACGAAAG CGTTATCTGA ATTAGCCATG GATTCTTCTA 
    CCACCTTGAA TGCTGCTGAG TCTAGCGCTG GTGATGGAGC TGGACCTCGG 
    AGTAAAAATG CTTTGAAGAA GGAACAGAAA ATGAAGCAGA AAGAGGAAGA 
    GAAGAGACGA AAGGACGAAG AGAAAAGCTG AAAAGGCTAA ACAAGCACCT 
    AAAGCAAGCT CCCAGAAGGC AGTGGCAGCA GATGATGAAG AGATGGATGC 
    AACGCAATAC TATGAGAACA GATTGAAATA TCTTGCGGCT GAGAAGGCTA 
    AAGGGGAGAA TCCATATCCT CACAAGTTCG CTGTGTCAAT GTCGATTCCT 
    AAATACATTG AGACGTATGG TAGTTTGAAC AATGGAGATC ATGTTGAAAA 
    CGCTGAGGAG TCTTTAGCTG GGCGGATAAT GAGCAAGCGA TCTTCCTCTT 
    CCAAGCTCTT CTTCTATGAT CTACACGGTG ATGATTTCAA GGTCCAAGTC 
    ATGGCTGATG CAAGTAAGTC AGGATTGGAT GAAGCTGAGT TCTTAAAGCT 
    CCATTCGAAT GCTAAGCGTG GTGATATTGT TGGAGTCATT GGGTTTCCAG 
    GAAAAACTAA GAGGGGAGAA TTGAGTATCT TTCCCCGATC ATTTATTCTT 
    CTGTCCCATT GCCTCCACAT GATGCCGAGA AAGGCTGATA ATGTTAATGC 
    AAAGAAACCT GAAATCTGGG TTCCAGGTCA AACGAGAAAT CCTGAAGCAT 
    ATGTTCTGAA AGACCAGGAA TCAAGATATC GTCCGCGTCA TCTTGATATG 
    ATTTTGAACG TGGAGGTTCG TCAGATATTC AGGACTAGAG CTAAAATCAT 
    CTCCTATGTC CGCAGATTCC TCGACAACAA AAATTTCTTG GAGGTCGAGA 
    CACCTATGAT GAACATGATT GCTGGTGGAG CAGCTGCTAG ACCTTTTGTG 
    ACACATCACA ATGATCTAGA TATGAGGCTG TACATGCGAA TCGCACCTGA 
    ACTCTATCTC AAGCAACTTA TTGTTGGTGG CTTGGAACGT GTTTACGAGA 
    TAGGAAAGCA ATTCAGAAAC GAGGGTATAG ACCTGACCCA CAATCCGGAG 
    TTCACCACTT GCGAGTTCTA TATGGCTTTT GCAGACTACA ATGACCTGAT 
    GGAAATGACT GAGGTTATGT TGAGTGGCAT GGTTAAGGAA TTAACAGGTG 
    GTTATAAAAT CAAGTATAAT GCTAATGGGT ATGACAAGGA TCCAATTGAA 
    ATCGACTTTA CTCCACCATT CAGGAGGATT GAGATGATAG GAGAGTTAGA 
    GAAGGTTGCT AAGCTCAATA TACCAAAAGA CTTGGCTAGC GAAGAAGCTA 
    ACAAGTATCT GATTGATGCA TGTGCGAGGT TTGATGTCAA ATGCCCTCCT 
    CCTCAGACAA CAGCTCGTCT GTTAGATAAA CTTGTTGGAG AATTTCTGGA 
    ACCGACATGT GTGAACCCAA CTTTCATCAT CAACCAGCCC GAGATCATGA 
    GTCCTTTGGC TAAATGGCAC AGATCGAAGA GTGGATTGAC AGAGAGATTC 
    GAGCTGTTCA TCAACAAACA TGAACTCTGC AATGCCTACA CGGAGCTAAA 
    CGATCCTGTG GTACAGCGCC AGCGTTTTGC TGATCAGCTC AAGGATCGAC 
    AGTCTGGAGA CGATGAAGCG ATGGCTTTAG ATGAAACATT TTGTAATGCT 
    TTAGAATATG GGTTGGCTCC TACAGGTGGC TGGGGATTAG GAATAGACAG 
    ACTCTCTATG CTTTTGACCG ACTCACTGAA CATCAAGGAG GTTCTTTTCT 
    TCCCGGCAAT GAGGCCACCA CAGGAGGAGT CAGCAGCCGC TCAAGCTCCT 
    TTAACAGAAG AGAAGAAATA AGGAGTCTAC ACAAGTTTTC TGACTAAGCT 
    TAGTCAATTC GCTATTATGC ACTCTGTTCT CAAGTTACTT GTAATTGCAG 
    ACCATATTTT TCAAAAAAAA AA

    Gene models with high sequence identity

    1. AT3G11710.1 [+] show detail - lysyl-tRNA synthetase 1
      E-value: 0; Score: 99.90

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Lysyl-tRNA synthetase, class II 1.4e-183
    superfamily Class II aaRS and biotin synthetases 1.9e-127
    superfamily Nucleic acid-binding, OB-fold-like 3.2e-39
    ProfileScan Aminoacyl-tRNA synthetase, class II, conserved domain 25.905
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPanther Lysyl-tRNA synthetase, class II, C-terminal 3.1e-209
    HMMPanther Aminoacyl-tRNA synthetase, class II (D/K/N)-like 3.1e-209
    Gene3D Nucleic acid-binding, OB-fold 5.5e-36
    Gene3D no description 5.1e-112
    HMMPfam Aminoacyl-tRNA synthetase, class II (D/K/N) 1.2e-87
    HMMPfam Nucleic acid binding, OB-fold, tRNA/helicase-type 5e-10
    FPrintScan Lysyl-tRNA synthetase, class II, C-terminal 9.5e-38
    FPrintScan Lysyl-tRNA synthetase, class II, C-terminal 9.5e-38
    FPrintScan Lysyl-tRNA synthetase, class II, C-terminal 9.5e-38
    FPrintScan Lysyl-tRNA synthetase, class II, C-terminal 9.5e-38
    FPrintScan Lysyl-tRNA synthetase, class II, C-terminal 9.5e-38

    See the detailed result >

    AT3G11710.1

    Model type
    Protein coding
    Short Description
    lysyl-tRNA synthetase 1
    Computational Description
    lysyl-tRNA synthetase 1 (ATKRS-1); FUNCTIONS IN: ATP binding, lysine-tRNA ligase activity; INVOLVED IN: lysyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (D/K/N) (InterPro:IPR004364), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Aminoacyl-tRNA synthetase, class II (D/K/N)-like (InterPro:IPR018150), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Lysyl-tRNA synthetase, class II, C-terminal (InterPro:IPR018149), Lysyl-tRNA synthetase, class II (InterPro:IPR002313), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195); BEST Arabidopsis thaliana protein match is: Lysyl-tRNA synthetase, class II (TAIR:AT3G13490.1); Has 24040 Blast hits to 20328 proteins in 2969 species: Archae - 380; Bacteria - 16623; Metazoa - 629; Fungi - 774; Plants - 209; Viruses - 0; Other Eukaryotes - 5425 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR