F17921

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F17921

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Original: F17921

Determination of introduced cDNA(s)

  • RAFL04-14-C14 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-14-C14 - Resource: pda00279

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-14-C14 - full reading 
    ATAACTCACA CTCTCTCTTA TCTCCTTTCC TTTCATTGTA GTTAACGAAA 
    AGATTACGAT AATGGCAACA TCAGCTATCC AGCAATCCTC CTTCGCCGGC 
    CAAACGGCTC TCAAGCCCTC CAACGAACTC CTCCGCAAGG TTGGTGTATC 
    CGGTGGTGGC CGTGTGACCA TGCGTCGTAC CGTCAAGTCT ACTCCTCAAA 
    GCATCTGGTA CCAAATCCAC TCTCTCTGGC TCTTACCTAA CCTATCATTA 
    ACTTTTCAGA TATGTCTAAT CACCAAATTC ATCTTGTAAC AGGTACGGAC 
    CAGACCGTCC CAAGTACTTA GGACCATTCT CGGAGAATAC ACCGTCCTAC 
    CTAACCGGAG AATACCCCGG AGACTACGGC TGGGACACCG CTGGACTCTC 
    GGCTGACCCG GAGACATTCG CTAAGAACCG TGAGCTTGAA GTAATCCACA 
    GCAGATGGGC TATGTTGGGT GCTCTCGGAT GCACATTCCC TGAGATTCTC 
    TCCAAGAACG GTGTTAAATT CGGAGAAGCC GTGTGGTTCA AGGCAGGTTC 
    TCAGATTTTC TCAGAAGGAG GTCTTGATTA CCTCGGAAAC CCTAACTTGA 
    TCCACGCGCA AAGCATCTTA GCCATCTGGG CTGTTCAAGT TGTGCTCATG 
    GGGTTCATTG AAGGCTACAG AATCGGAGGT GGACCTCTCG GAGAAGGGCT 
    TGACCCGCTT TACCCCGGAG GTGCGTTCGA CCCATTGAAC TTGGCTGAGG 
    ATCCAGAGGC TTTCTCTGAG CTGAAGGTGA AGGAGCTTAA GAACGGTCGT 
    CTTGCCATGT TCTCTATGTT TGGATTCTTT GTCCAAGCCA TTGTTACTGG 
    TAAAGGTCCC ATTGAGAACT TATTTGATCA TTTGGCTGAT CCTGTGGCTA 
    ACAACGCCTG GTCTTACGCT ACTAACTTTG TCCCCGGAAA TTAATTATCT 
    TATGTATTTG CTTCATAATC TCTCTGCTTT GTAAAGTCGT GAATGTACTT 
    ATTGGTGTTT TATGTGAGTT TGGTACTTAA GAAAAAAAAA AAAAAAA

    Gene models with high sequence identity

    1. AT2G05100.1 [+] show detail - photosystem II light harvesting complex gene 2.1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Chloroa_b-bind 1.6e-49
    HMMPanther Chlorophyll A-B binding protein 3.3e-170
    HMMPanther Chlorophyll A-B binding protein 1.7e-11
    superfamily Chlorophyll a-b binding protein 8.6e-80

    See the detailed result >

    AT2G05100.1

    Model type
    Protein coding
    Short Description
    photosystem II light harvesting complex gene 2.1
    Curator Summary
    Lhcb2.1 protein encoding a subunit of the light harvesting complex II. Member of a gene family with high degree of sequence similarity. Initially LHCB2.3 was considered as a separate gene but appears to be an allele of LHCB2.1.
    Computational Description
    photosystem II light harvesting complex gene 2.1 (LHCB2.1); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to salt stress, response to blue light, response to red light, response to far red light, photosynthesis; LOCATED IN: in 7 components; EXPRESSED IN: 12 plant structures; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem II light harvesting complex gene 2.2 (TAIR:AT2G05070.1); Has 2375 Blast hits to 2314 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 2059; Viruses - 0; Other Eukaryotes - 312 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR