F17924

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F17924

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F17924

Determination of introduced cDNA(s)

  • RAFL04-20-J15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-20-J15 - Resource: pda07218

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-20-J15 - full reading 
    ATTCACACAC AAGTTGGTGT CAACGCTCAG ACAAGAAAGG CGTGTGTTCA 
    TTGTTGAATC TTCCCATTTC CTCATCCAAA TTCCGACATA ACTATCCTAG 
    CCGCCATTTG TTCTCCACAT TACAAAACCC TCAGCAGCTT CAAAACTCTT 
    CCGATCTCTC CCTCACGCTC GCAATTCTCT CGTCTCCATT TTAATAGTTT 
    TTCTTCTCGG AATCACAAAT CTTCGGCTTC TTGTTCCTTG GCGTGTGTGT 
    GTGTTGTTGA ATGGCTCTTG TTCAGCGGAT TCCAATTTCC TCCTCCAGTA 
    TTCGGAATTG GCAACAAGCG AGGACCAATT TGACTCCTAT TTGTTGTTTA 
    CATTACAATA CTGCATCTTC TTCTTCTTCA CCCTTTACAG AGAAGCACTC 
    TGTGGAGAGA TACCAAAGGG ATCAATGGCT GTACAAAGCG GTTGAACCAA 
    CGCCACCATC GACTCCATCT CCATCGCCAT TTGAAGATGA AGTCTTTGTT 
    AGGGAAAACG ACATTGCATC GCAGCTGCCT GAGCTGAAGA AGCTTTTGGC 
    AGTGCTGAAA GAGAAGAGAG TTAAAGGATG CAAAGGTGGT GATTGTGGAC 
    CAGGAGATGT GTATCTTGTT GGGACAGGGC CAGGAGATCC TGAGCTTTTG 
    ACTCTTAAAG CTGTCAGAGT TATTCAAAGT GCCGATCTTT TGCTTTACGA 
    CAGGCTTGTC TCCAATGATG TCTTGGAGTT GGTTGCTCCT GATGCTAGAC 
    TTCTTTATGT CGGCAAAACT GCTGGTTATC ATAGCAGAAC TCAGGAAGAG 
    ATTCATGAAC TACTCCTAAA TTTTGCTGAA GCTGGTGCCA CTGTTGTCAG 
    GCTTAAAGGT GGAGATCCTC TGGTCTTTGG ACGGGGCGGC GAAGAAATGG 
    ACTTTCTGCA ACAGCAAGGG ATTCGAGTTC AAGTTATACC AGGGATAACT 
    GCGGCGTCGG GGATAGCAGC AGAGTTGGGG ATTCCACTAA CACATCGAGG 
    TGTTGCAACT AGTGTAAGGT TTCTCACTGG TCATTCAAGG AAAGGAGGGA 
    CAGACCCTCT GTTTGTTGCA GAGAATGCAG CTGACCCGGA TACAACACTT 
    GTCGTTTATA TGGGTTTGGG AACTTTACCT TCTCTTGCAC AAAAACTAAT 
    GGACCATGGT CTCCCTTCTG ATACACCAGC TGTTGCGGTT GAACGTGGAA 
    CCACTCCTCT ACAGCGTACA GTTTTTGCTG AGCTTAAAGA TTTTGCAACT 
    GAGATTCAGT CAGCTGGATT GGTGTCACCA ACACTCATCA TCATAGGGAA 
    AGTCGTTGAG CTCTCACCTT TATGGCCACA TTGCACGAAA GAATCCTCCT 
    GCCTTGTAGA GACCCGGTAG ATATTTCACT CTTATTTTAC GGGCGTGTGG 
    CTTCCATCGA CATTACGGTG AAGTTTTAGG AGCTATGGAG CTATGAAGGT 
    TGAGACTTGA GAGATGTAAT AAACAAAAAG GAAAGCTGAT AGTTTCTTAT 
    GACGTGTCCT TCAATTGTTT TGGGACAATG GTAATGGCAA TGTTAATGTA 
    ATAAACAAGT TTCAATCAGT GCCACTGTGA CTAATTTTTC CACCACAAGA 
    TGATGTCTTT AAAACTTTAA TAGTCAAATT CAAATC

    Gene models with high sequence identity

    1. AT5G40850.1 [+] show detail - urophorphyrin methylase 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PTHR21091:SF16 4.30000170646176e-113
    PatternScan Uroporphiryn-III C-methyltransferase, conserved site 0
    Gene3D Tetrapyrrole methylase, subdomain 2 1.60000240695986e-36
    HMMPIR Uroporphyrin-III C-methyltransferase, plant 0
    HMMTigr Uroporphyrin-III C-methyltransferase, C-terminal 5.6999970878395e-108
    HMMPfam Tetrapyrrole methylase 3.09999999999998e-47
    Gene3D Tetrapyrrole methylase, subdomain 1 1e-38
    superfamily Tetrapyrrole methylase 4.2e-69
    HMMPanther PTHR21091 4.30000170646176e-113
    PatternScan Uroporphiryn-III C-methyltransferase, conserved site 0

    See the detailed result >

    AT5G40850.1

    Model type
    Protein coding
    Short Description
    urophorphyrin methylase 1
    Curator Summary
    Encodes a urophorphyrin III methylase that catalyzes S-adenosyl-L-methionine-dependent transmethylation in a multistep process involving the formation of a covalently linked complex with S-adenosyl-L-methionine.
    Computational Description
    urophorphyrin methylase 1 (UPM1); CONTAINS InterPro DOMAIN/s: Tetrapyrrole methylase (InterPro:IPR000878), Tetrapyrrole methylase, subdomain 1 (InterPro:IPR014777), Uroporphyrin-III C-methyltransferase, plant (InterPro:IPR012383), Uroporphyrin-III C-methyltransferase, C-terminal (InterPro:IPR006366), Tetrapyrrole methylase, subdomain 2 (InterPro:IPR014776), Uroporphiryn-III C-methyltransferase, conserved site (InterPro:IPR003043); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR