F17929

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F17929

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F17929

Determination of introduced cDNA(s)

RAFL14-42-M15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL14-42-M15 - Resource: pda18565

full reading [+] show sequence

GCTCTGTTCG GCTGCTTCAT CGAGCGGAAG TCTCTAGCCA ATTACCGTTT 
GTTCGTGGAC TCGAGATATT GTGGTTTCTT AGCAAAGAAG ATGAGTGGAG 
TTGGAGAGAA AGCTTCTGGA ACAACTAAGA CACCTGCTGA TTTCTTGAAA 
TCTATCCGTG GTAAACCAGT TGTTGTCAAG CTCAACTCTG GTGTTGATTA 
TCGAGGCATT CTTACTTGTC TTGATGGATA TATGAACATC GCAATGGAGC 
AAACCGAAGA GTATGTAAAT GGCCAGCTGA AGAACACATA TGGCGACGCT 
TTTGTCCGTG GCAACAATGT TCTTTACATC AGCACAACAA AGGGGACATT 
GTCCGATGGA GCATAGCTCT CTTTCATCAC CATGAATGTT CATCTTCTTC 
TCTACCTCTG GCATATGACA AATGTAGGAT TTGTAGCAAC CAGAGTTTAT 
CACCACTGCA TGAATTCGAC ATGTCTTTTT CTTCCGCAAC TCAGTTTGTG 
TCTAAATCAT CTCCAAAATT CTGAGATATA GCTAGATTTT TATTTGTTAT 
GAAATTTTTT TTAATCACTG TTGGTCTTTG GAGCCTAATT ATCGTGTTTT 
GATGACGCAA TCACTGCGTC ACAATCTGAT GTCATCTTAA CAATCATTAA 
TGTATTTTTT TTTTCTTTTC TCGTAATATT CTTAATTATT CTTCGACAGC 
AAAGGTTTAA AAACTCCTTA TTTCAATCAT TAATGTATTT ATGATTTGAT 
CGAATAACAA TAATATAGCT TATTTTGTTC TAAAAAAAAA A

Gene models with high sequence identity

AT2G43810.2 [+] show detail - Small nuclear ribonucleoprotein family protein
E-value: 0; Score: 99.87

InterPro Scan Digest

Program	Description	E-value
superfamily	Like-Sm ribonucleoprotein (LSM)-related domain	6.1e-21
HMMPfam	Like-Sm ribonucleoprotein (LSM) domain	2e-16
HMMSmart	Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type	5.5e-21
Gene3D	no description	2.7e-20
HMMPanther	SMALL NUCLEAR RIBONUCLEOPROTEIN F (SNRNP-F)	1.1e-47

See the detailed result >

AT2G43810.2

Model type: Protein coding
Short Description: Small nuclear ribonucleoprotein family protein
Computational Description: Small nuclear ribonucleoprotein family protein; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT3G59810.1); Has 1180 Blast hits to 1180 proteins in 300 species: Archae - 305; Bacteria - 0; Metazoa - 337; Fungi - 255; Plants - 126; Viruses - 0; Other Eukaryotes - 157 (source: NCBI BLink).
Link: InterPro Scan - TAIR