F17936

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F17936

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F17936

Determination of introduced cDNA(s)

  • RAFL04-17-H03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-17-H03 - Resource: pda00619

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-17-H03 - full reading 
    GTTACTTTAA AGCCAAAAAG AAGAATACAC AAACTTCATT CACTCTCTCC 
    CATTCTCGGA TCTCTCTCAG TGCACAGTGG TTGTCACTCT TCTCCTTTGG 
    TCGAAACTCT TTCTTGGAAA GAGCATTTTG TTATCAAGAC TCTGAAGAGC 
    TCTTTTGGGA GGATAGTAAG GTTGGATGAT GAGAGGGAGA TCTGATGGAG 
    GCCTAAAGAA GCGGCTTATT GCTTCGGTCT GTGTCGTGGC TCTATTCGTC 
    TGTTTCTTGT TTATGTACTA TGGTTCCTCT AGCCAAGGTG CATCAGCATT 
    GGAATATGGA AGATCTTTGA GAAAACTCGG ATCGTCTTAT TTGAGTGGAG 
    ATGATGATAA TGGTGATACC AAACAGGATG ATTCTGTGGC TAATGCAGAA 
    GACAGTCTTG TTGTCGCCAA AAGTTTTCCT GTTTGTGATG ACCGGCACTC 
    GGAAATCATC CCTTGCTTAG ATAGGAATTT CATCTACCAA ATGAGGTTGA 
    AGCTTGATCT CTCTTTAATG GAACATTATG AACGGCATTG TCCTCCTCCC 
    GAAAGACGGT TTAATTGTTT GATTCCTCCA CCATCTGGAT ACAAGGTTCC 
    TATTAAGTGG CCTAAGAGTA GAGATGAAGT GTGGAAAGCA AACATACCTC 
    ACACTCACCT TGCAAAAGAG AAGTCTGATC AGAACTGGAT GGTTGAGAAA 
    GGCGAGAAAA TTTCTTTTCC CGGTGGAGGC ACTCATTTCC ATTGCGGTGC 
    TGATAAATAC ATTGCATCGA TCGCAAATAT GCTTAACTTT TCGAACGATG 
    TATTGAATGA CGAAGGGAGA TTAAGAACGG TTCTTGATGT CGGATGCGGA 
    GTTGCGAGTT TTGGAGCTTA CCTTCTCGCG TCTGATATAA TGACAATGTC 
    ACTAGCCCCT AATGATGTTC ATCAGAACCA AATCCAGTTT GCGTTAGAAA 
    GAGGAATCCC TGCTTATCTT GGTGTTTTAG GTACCAAAAG GCTTCCTTAC 
    CCGAGCAGAT CATTCGAGTT TGCTCATTGT TCTCGATGTA GGATTGATTG 
    GCTTCAAAGA GACGGACTTC TTCTTCTTGA GCTCGATCGG GTACTAAGAC 
    CGGGAGGTTA TTTCGCGTAT TCGTCTCCTG AAGCTTACGC ACAAGATGAA 
    GAGAATTTGA AAATCTGGAA GGAGATGAGT GCTCTTGTTG AAAGAATGTG 
    TTGGAGAATT GCCGTTAAAA GAAACCAAAC TGTGGTTTGG CAGAAACCGT 
    TGAGTAATGA CTGTTACTTG GAGAGAGAGC CCGGGACACA GCCTCCTCTC 
    TGTCGCTCAG ATGCTGATCC TGATGCGGTT GCGGGTGTTT CAATGGAAGC 
    TTGCATCACT CCTTACTCCA AGCATGACCA TAAAACCAAG GGAAGTGGGT 
    TAGCTCCTTG GCCAGCTAGG TTGACTTCTT CTCCTCCCCG TCTTGCGGAT 
    TTCGGTTATT CAACCGACAT GTTTGAGAAG GACACGGAAC TTTGGAAACA 
    ACAAGTGGAC AGTTACTGGA ATCTGATGTC ATCGAAAGTC AAATCAAACA 
    CTGTGAGGAA CATAATGGAC ATGAAAGCTC ACATGGGTTC TTTCGCAGCT 
    GCTCTTAAAG ACAAAGATGT GTGGGTGATG AACGTTGTCT CTCCCGACGG 
    TCCCAACACT CTAAAACTGA TCTACGACCG TGGTTTAATC GGAACAAATC 
    ATAACTGGTG TGAGGCTTTC TCTACATATC CTCGAACATA CGATCTGTTG 
    CACGCGTGGT CTATATTTTC AGACATTAAA AGCAAAGGAT GCAGTGCAGA 
    GGATCTACTA ATCGAGATGG ATCGGATTCT TAGACCTACG GGATTCGTTA 
    TCATCAGAGA TAAGCAGAGT GTTGTTGAGT CAATCAAGAA GTATTTGCAG 
    GCTTTGCATT GGGAGACTGT GGCATCAGAG AAGGTAAATA CAAGTTCAGA 
    ACTCGACCAA GACAGTGAAG ATGGTGAGAA CAATGTCGTT TTCATTGTCC 
    AGAAGAAACT TTGGCTCACC AGTGAAAGCC TTAGGGACAG CGAGTAAAAA 
    ACATATCAAA AGCAAAGAGA GAGAAATTGT TTTATCCCAC AAAGTTTTTA 
    TATAGTTTTA TTTTGATTTT TGTAGTTGAT TTGTACGACA TAAAGCATTA 
    TTATATAAAA TACTAAAATT ATTCA

    Gene models with high sequence identity

    1. AT1G04430.1 [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
      E-value: 0; Score: 99.95

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 1.4e-05
    superfamily S-adenosyl-L-methionine-dependent methyltrans 6.8e-23
    superfamily S-adenosyl-L-methionine-dependent methyltrans 7.9e-09
    HMMPfam Protein of unknown function DUF248, methyltransferase putative 3.1e-226

    See the detailed result >

    AT1G04430.1

    Model type
    Protein coding
    Short Description
    S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
    Computational Description
    S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT3G23300.1); Has 1231 Blast hits to 1208 proteins in 77 species: Archae - 0; Bacteria - 97; Metazoa - 0; Fungi - 0; Plants - 1110; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR