F17941

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F17941

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F17941

Determination of introduced cDNA(s)

  • RAFL09-20-F24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-20-F24 - Resource: pda05578

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-20-F24 - full reading 
    AGGAAACCAA AGGAACCTCG ACTTCACTAT GATTTACCTC CGAGCCCTCC 
    GACTCTTCCC ATCATTGGTC ATCTTCACCT TCTTCTCTCT GTTCTAGTCC 
    ACAGATCTTT ACAGACACTC TCCACCAAGT ATGGGTCTAT TCTCTATCTT 
    CGCGTCTTCA GTTTCCCTGT AGCCCTCGTC TCCTCAGCAT CTATTGCTTA 
    TGAGATCTTC AGGGAACACG ACGTGAACAT CTCGTCTCGT GGTTTCCCTC 
    CTACCGATGA TTCCCTTTTT GCTGGATCTT TCAGCTTCAC CTCTGCTCCC 
    TATGGAGATT ACTGGAAGTT CATGAAGAAG CTCCTGGTCA CGAACTTGCT 
    TGGACCCCAG GCACTCGAGC GGTCACGAGG ATTCCGTGCA GATGAGCTAG 
    ATCTGTTTTA CGAGAACCTG TTGGATAAAG CGATGAAGAA GGAGAGCGTG 
    GATATCTGTG TGGAGGCGTT GAAGCTCAGT AACAACAGCA TCTGCAAGAT 
    GATCATGGGG AGGAGTTGTT CAGAGGAGAA TGGTGAGGCA GAGAGAGTTA 
    GGGCTTTGGC TACCTAGTTA GATGGCTTGA AGAAGAAGAT CTTATTGGCG 
    AACATGTTGC GTGCGGGGTT TAAAAAGCTT GTTGTCTCAC TGTTTAGAAA 
    GGAAATGATG GATGTTTCCA GCAGATTTGA TGAGCTGCTC GAAAGGATCC 
    TTGTGGAACA TGAAGATAAA CTGGACATGC ATCATCAAGG TACAGACTTA 
    GTGGACGCGT TGTTGGCAGC TTGTCGGGAC AAAAATGCAG AGTATAAGAT 
    CTCTAGGAAC CATATCAAGT CGTTTTTCGC GGATCTCTTA TTTGCAAGCA 
    CTGACACCTT TGTGCAAACA ACACAGTGGA CAGTGGCGGA GATCATTAAT 
    AACCCTAATG TTCTTGAGAG ATTGAGAGGA GAAATCGATT CCGTGGTCGG 
    GAAAGTAAGG TTGATTCAAG AAACTGATTT GCCAAACCTC CCTTATTTGC 
    AAGCGGTGGT CAAGGAAGGG CTAAGACTGC ATCCGCCGGG GCCTCTCTTT 
    GCAAGGTTCT CCCAAGAAGG GTGTAGGATC GGAGGGTTCT ATGTACCGGA 
    GAAAACAACA TTAATGATTA ATGCTTATGC TGTGATGAGA GATTCTGATT 
    CTTGGGAAGA TCCTGATGAG TTTAAACCAG AGAGGTTTCT AGCTTCGTCA 
    AGATCAGAGC AGGAAAAGGA GAGAAGAGAG CAAGCAATTA AGTACATTGC 
    TTTCGGAAGC GGACGAAGAA GCTGTCCTGG AGAAAATCTA GCATATATCT 
    TTTTAGGAAC TGCAATTGGA GTGATGGTAC AGGGATTTGA GTGGAGAATC 
    AAAGAAGAGA AAGTTAACAT GGAAGAGGCT AATGTAGGAC TGAGCTTGAC 
    CATGGCTTAT CCTCTTAAGG TCACTCCTGT TCCTCGAACC CTAGTCCCCT 
    TAACTCAGAA TCCACTGAAC CGGAGTTCAT GAATCTTTGG TAAGTAATTA 
    GGTAGCCTTG TTTTTACGTT ACCGTGTCTG AGTTTACTGG TTTAGTTTGG 
    CTAATGTGTG AAACCGTAAA CAATTGTGTT GTTATTCGGA TTTATTTGTG 
    GATTGGTTCA TATATGGGGT TATCTTGAAA GCAGCAAACT TTAGCTTCTT 
    CATGTTACTT GGTTCAATGG ATTTGAAGGA TGCCAGTTGG AGTAGC

    Gene models with high sequence identity

    1. AT3G20080.1 [+] show detail - cytochrome P450, family 705, subfamily A, polypeptide 15
      E-value: 0; Score: 99.82

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Cytochrome P450, E-class, group I 1.7e-28
    FPrintScan Cytochrome P450, E-class, group I 1.7e-28
    FPrintScan Cytochrome P450, E-class, group I 1.7e-28
    FPrintScan Cytochrome P450, E-class, group I 1.7e-28
    FPrintScan Cytochrome P450, E-class, group I 1.7e-28
    FPrintScan Cytochrome P450, E-class, group I 1.7e-28
    FPrintScan Cytochrome P450, C-terminal 4.9e-08
    FPrintScan Cytochrome P450, C-terminal 4.9e-08
    FPrintScan Cytochrome P450, C-terminal 4.9e-08
    FPrintScan Cytochrome P450, C-terminal 4.9e-08
    superfamily Cytochrome P450 3.4e-31
    superfamily Cytochrome P450 6.1e-79
    HMMPanther CYTOCHROME P450, SUBFAMILY 93 1.3e-162
    HMMPanther Cytochrome P450 1.3e-162
    HMMPanther CYTOCHROME P450, SUBFAMILY 93 8.5e-108
    HMMPanther Cytochrome P450 8.5e-108
    HMMPfam Cytochrome P450 4e-14
    HMMPfam Cytochrome P450 4.5e-65
    Gene3D Cytochrome P450 6.7e-27
    Gene3D Cytochrome P450 8.7e-73
    PatternScan Cytochrome P450, conserved site 0

    See the detailed result >

    AT3G20080.1

    Model type
    Protein coding
    Short Description
    cytochrome P450, family 705, subfamily A, polypeptide 15
    Curator Summary
    member of CYP705A
    Computational Description
    "cytochrome P450, family 705, subfamily A, polypeptide 15" (CYP705A15); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 705, subfamily A, polypeptide 4 (TAIR:AT4G15380.1); Has 32700 Blast hits to 32491 proteins in 1676 species: Archae - 51; Bacteria - 3683; Metazoa - 11407; Fungi - 7150; Plants - 9260; Viruses - 6; Other Eukaryotes - 1143 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR