F17946

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F17946

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F17946

Determination of introduced cDNA(s)

  • RAFL05-18-P09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-18-P09 - Resource: pdz87526

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL05-18-P09 - 5 prime EST 
    GAAGAAAAGG CAGAGAAGAG AGAGGCTCTG ATAAAAAAAA AAACAAAAAA 
    AAATGACAAA GGCTTATTCA ACACGTGTCC TCACGTTTCT GATATTGATC 
    TCGCTAATGG CGGTGACACT GAACCTTTTT CCCACGGTAG AGGCAAAGAA 
    GCGGAGTAGA GATGCTCCTA TAGTGAAAGG TCTCTCATGG AACTTTTACC 
    AGAAAGCATG TCCGAAAGTC GAAAACATCA TCAGAAAAGA GCTCAAGAAA 
    GTCTTCAAGC GAGATATTGG TTTAGCCGCT GCCATCCTTC GTATACATTT 
    CCATGATTGC TTCGTTCAGG GATGTGAAGC ATCAGTGCTG CTAGCTGGAT 
    CAGCCAGTGG ACCAGGAGAA CAATCATCAA TCCCAAATCT GACACTACGA 
    CAACAAGCCT TTGTCGTCAT TAATAACCTT CGTGCCCTCG TCCAAAAGAA 
    GTGCGGTCAA GTCGTCTCTT GCTCAGATAT CCTCGCTCTC GCCGCTCGCG 
    ATTCCGTCGT CCTATCAGGA GGGCCAGACT ATGCTGTCCC ACTTGGCCGA 
    CGTGACTCTC TAGCGTTCGC GAGCCAGGAA ACGACGTTAA ATAACTTACC 
    ACCACCGTTC TTCAACGCGA GTCAGCTCAT CGCCGACTTC GCCAACAGAA 
    ACCTCAACAT CACCGACTTA GTAGC

    Gene models with high sequence identity

    1. AT1G71695.1 [+] show detail - Peroxidase superfamily protein
      E-value: 0; Score: 100.00

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL05-18-P09 - 3 prime EST 
    AAGATGAAGC GACGTTCTTA TTTATCAGAT AGTTTTACGC ATTCGACAAC 
    CCAACCACAA GTGCATGAAC TAAATAAAAA CAGAGTTGAC AAAGGAAAGG 
    TCGAGATTTA TGGTTATTTA GATCATGGAA ATAGCTTCCT CTATGCCTTC 
    TTCCAAAACG GACATGAAAC TTTGGGTGTT TCTGGCTGAA CAATTGGAAC 
    GAATCTCTCC TTGTGTTCCA GTTAAGACAC TCATCTGACC CATCTTGATC 
    ATCGCCACAG TAAAATAATC AAAAAACAGC TGCTGGTCGA TCGCAAAGCT 
    TTCCACAATG CCACGTGTCC TCTTATCCAC GAAGAGATCC TGGTCAGAAG 
    TGAATAGCCC TTGTCGGTTC ATGAGATCAA CGTAGTACTT GTTGTCGAAC 
    ACGTCAGGAC TCCTTATGTC ATTCACTTGC GTGTTGCTCG AGTTTGCGGT 
    GGGACAAGTG CGTTTGAGGC TGTTGGCGAA GAACTGGTTC ATGGTTGGGT 
    CTTGGTTCGG GTAGAGTCGG TCTGTGAAAG ACGGACAATG CGCGATTCCG 
    ATGGTGTGAC CACCGGAAAG TGCTACTAAG TCGGTGATGT TGAGGTTTCT 
    GTTGGCGAAG TCGGCGATGA GCTGACTCGC GTTGAAGAAC GGTGGTGGTA 
    AGTTATTTAA CGTCGTTTCC TGGCTCGCGA ACGCTAGAGA GTCACGTCGG 
    CC

    Gene models with high sequence identity

    1. AT1G71695.1 [+] show detail - Peroxidase superfamily protein
      E-value: 0; Score: 100.00

    AT1G71695.1

    Model type
    Protein coding
    Short Description
    Peroxidase superfamily protein
    Computational Description
    Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: cell wall, vacuole, membrane, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT2G18150.1); Has 4523 Blast hits to 4498 proteins in 279 species: Archae - 0; Bacteria - 4; Metazoa - 1; Fungi - 207; Plants - 4264; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR