F18002

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small) present in fewer numbers in organism (PATO:0001997) (Cauline leaf::Number::few)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) increased width (PATO:0000600) (Rosette leaf::Shape::wide) present in fewer numbers in organism (PATO:0001997) (Rosette leaf::Number::few)
	sporophyte vegetative stage (PO:0007134)	decreased speed (PATO:0000304) (Adult plant::Growth::slow)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin)
T2
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small)
	rosette leaf (PO:0000014)	dark green (PATO:0001249) (Rosette leaf::Color::dark) decreased size (PATO:0000587) (Rosette leaf::Shape::small) abnormal (PATO:0000460) (Rosette leaf::Others)
	stem (PO:0009047)	present in fewer numbers in organism (PATO:0001997) (Stem::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F18002

Determination of introduced cDNA(s)

RAFL05-13-B05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-13-B05 - Resource: pda03017

full reading [+] show sequence

CTCGATTGGT ATCTCTCGCT CCGTCCTTCC TCAGATCTGA TCGTCCGCCG 
GTTTTCACGA TGCCGTCTTC CTCCTCCGCC GCCGTCCTCG TGTTCCTTCT 
TCTCGTTTCC CTTCTCACTC CTACGTTCGC ATCCGATTCA GATCACAAGT 
ATCAAGCCGA GGAGCAGGTC ACCCTATGGG TAAACAAAGT TGGCCCATAT 
AACAATCCAC AAGAAACATA CAACTATTAC AGTCTTCCAT TTTGCCGCCC 
ATCTGGAAAC AATGTTCACA AATGGGGTGG TCTTGGTGAA GTTCTAGGTG 
GAAATGAGCT GATTGACAGT GAGATTGCGA TAAAATTCAT GAAGAATGTC 
GAGAGAAGTG TCATCTGTCC GCTTGAACTC GATGAAGCTA AGGTCAAGCA 
TTTTAAAGAT GCCATTGAAT CTAGCTACTG GTTCGAATTT TTTATGGATG 
ATCTACCTTT GTGGGGCTTT GTGGGTGAGC TGCATCCTGA CAAAAATAGT 
GAAAACGGCA AGCATGTTCT TTACACACAT AAGAACATTG TTGTCAAATA 
CAACAAAGAC CAGATCATTC ATGTTAATCT CACTCAAGAC AACCCAAGGC 
CATTGGAAGC AGGGAAAAAA ATGGACCTGA CGTATTCTGT GCAATGGATT 
CCAACAAATG TCACATTTGC TCGCCGCTTT GACGTATATC TGGATTATCC 
GTTCTTTGAA CACCAGATCC ACTGGTTCTC CATCTTTAAC TCGTTCATGA 
TGGTTATTTT CCTCACCGGT TTGGTCTCAA TGATATTGAT GAGGACTCTC 
AGAAATGATT ATGCGAAGTA TGCTAGAGAA GATGATGATC TTGAGAGCTT 
GGAACGGGAT GTAAGTGAAG AATCTGGTTG GAAACTTGTG CATGGAGATG 
TGTTCAGGCC AGCAAGTAGT CTAGTTCTGC TCTCAGCGGT AGTTGGTACA 
GGTGCACAGT TGGCGTTGCT GGTTCTTCTT GTCATATTAA TGGCCATCGT 
GGGAACTCTC TACGTTGGGA GAGGAGCAAT CGTCACAACT TTCATAGTGT 
GCTATGCTCT GACTTCTTTT GTCTCTGGTT ATGTGAGCGG TGGAATGTAC 
TCAAGAAGCG GGGGTAAACA TTGGATCAAG TGCATGGTCC TCACGGCTTC 
TCTCTTCCCC TTTTTGTGCT TCGGAATTGG CTTTCTCCTA AACACAATTG 
CCATATTCTA TGGATCTCTT GCGGCTATTC CTTTTGGGAC AATGGTGGTT 
GTGTTTGTAA TTTGGGGGTT CATTTCCTTC CCCTTAGCCC TCCTCGGAAC 
GGTTGTTGGA AGAAATTGGA GCGGTGCTCC TAACAATCCA TGCCGTGTGA 
AGACTATTCC ACGTCCAATC CCTGAGAAAA AATGGTACTT GACTCCATCA 
GTCGTCTCCC TGATGGGGGG TTTGCTACCC TTTGGAAGCA TCTTCATTGA 
GATGTACTTT GTCTTCACAT CCTTCTGGAA TTACAAGGTC TACTATGTGT 
ATGGATTCAT GTTACTGGTT TTTGTGATTC TCGTCATAGT GACGGTGTGT 
GTGACAATCG TGGGTACATA TTTCCTGCTG AATGCAGAGA ACTATCACTG 
GCAGTGGACT TCATTTTTCT CTGCTGCTTC GACGGCTGTC TATGTGTACT 
TATACTCCAT CTATTACTAC TACGTAAAGA CCAAGATGTC CGGATTCTTC 
CAGACAAGCT TCTACTTTGG ATACACCATG ATGTTCTGTC TTGGCCTTGG 
AATCCTTTGC GGAGCTGTTG GCTACCTGGG ATCAAATCTG TTTGTAAGGA 
GGATCTACAG AAACATCAAG TGCGACTAGA AGAGGTAAAC GGAAAAAAAG 
AGAAAACAAA TCCAATTAGA AGGAAGCTCT TACGAGGTTA TATATTATAT 
TGAAGGAACA TAATATATTC TTCAATGGGG GCTTTTTGTC TCTTCATCTT 
CTTCTTTTTT TTTTTTTTTT TTTTCTTCCC ATTTTGGTAA GTGAATTGTT 
CTCTTTAGAT TAGAATCGAG TGGGTGTACT ATACTACTAC TACCTGTAAA 
TTTTTCCCTA TC

Gene models with high sequence identity

AT1G10950.1 [+] show detail - transmembrane nine 1
E-value: 0; Score: 99.85

InterPro Scan Digest

Program	Description	E-value
HMMPanther	ENDOMEMBRANE PROTEIN EMP70	0
HMMPanther	Nonaspanin (TM9SF)	0
HMMPfam	Nonaspanin (TM9SF)	2.8e-187

See the detailed result >

AT1G10950.1

Model type: Protein coding
Short Description: transmembrane nine 1
Curator Summary: Encodes an Arabidopsis Transmembrane nine (TMN) protein. Transmembrane nine (TM9) proteins are localized in the secretory pathway of eukaryotic cells and are involved in cell adhesion and phagocytosis.
Computational Description: transmembrane nine 1 (TMN1); LOCATED IN: integral to membrane, Golgi apparatus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: Endomembrane protein 70 protein family (TAIR:AT5G37310.1); Has 1611 Blast hits to 1538 proteins in 326 species: Archae - 0; Bacteria - 16; Metazoa - 610; Fungi - 273; Plants - 454; Viruses - 0; Other Eukaryotes - 258 (source: NCBI BLink).
Link: InterPro Scan - TAIR