F18042

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F18042

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F18042

Determination of introduced cDNA(s)

  • RAFL06-10-A12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-10-A12 - Resource: pda12255

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-10-A12 - full reading 
    AAGAAGAAGA AATAGAAAAG TTCGGATTTT GATCTGTGTG GTTGGATTGT 
    TGCAAGAACT AAACCAGACC CACCTTTCAA AACTTTGTCC CTAACGAACA 
    ACATTAATCA TTCATTCTCC TGTGTGAGCT CTTCCTCTTC TTCTGTTTAA 
    GGTTCTTTCT CCTTCTTCTT TTGAGGGGGT TTAAAGCTTC AGTGGACGAA 
    AAGAGTTTGT TTTTTGGGTG ACAATGGGAG GAGTGGTGCA TCTTAGCACG 
    GCGAAGTTAG CTAGAGGTTT CTTAGTGTGT TTATGTCTTT GGGGTTTTTT 
    CTCGCTATCA TACGCCGCAA GGTCCGGCGT ATCAAAGCAG AAGTTTGAAG 
    TGAAGAAACA TTTGAACAGG CTGAACAAAC CTGCTGTCAA AAGCATTCAG 
    AGTTCAGATG GTGATGTGAT TGACTGTGTT CCAATCTCAA AGCAACCAGC 
    TTTTGATCAT CCGTTCCTCA AAGATCACAA GATTCAGATG AAGCCTAATT 
    ACCACCCTGA AGGACTCTTT GATGACAACA AAGTGTCTGC TCCTAAATCA 
    AATGAGAAAG AAGGGCATAT TCCTCAGTTG TGGCATCGAT ATGGTAAATG 
    TTCTGAAGGA ACTATTCCCA TGAGGAGGAC AAAGGAAGAT GATGTTTTGA 
    GAGCAAGTTC AGTTAAAAGA TATGGCAAGA AGAAGCGTAG AAGTGTCCCT 
    TTACCTAAAT CTGCAGAACC TGACCTTATT AACCAAAGTG GTCACCAGCA 
    TGCCATAGCT TATGTAGAAG GAGATAAGTA CTATGGAGCT AAGGCTACTA 
    TAAATGTGTG GGAGCCAAAG ATACAGCAGC AGAATGAGTT CAGCTTGTCA 
    CAGATATGGC TTCTTGGTGG CTCATTCGGA CAAGATCTTA ATAGCATCGA 
    AGCTGGTTGG CAGGTGAGCC CGGATCTGTA TGGTGACAAT AACACGAGAC 
    TCTTCACTTA CTGGACTAGT GATGCATATC AAGCTACCAG TTGCTACAAT 
    CTTCTTTGCT CCGGTTTTAT TCAAATCAAC AGTGACATAG CAATGGGAGC 
    AAGCATTTCC CCGGTCTCTG GATATCGTAA CTCGCAGTAC GATATCAGTA 
    TTCTGATCTG GAAGGATCCT AAAGAGGGAC ACTGGTGGAT GCAATTTGGG 
    AACGGCTATG TTTTAGGCTA TTGGCCATCT TTTCTCTTCT CCTACTTGAC 
    AGAAAGTGCA TCGATGATTG AATGGGGAGG AGAAGTCGTG AACTCACAAT 
    CAGATGGCCA GCACACTTCA ACACAAATGG GCAGTGGTAA ATTTCCAGAA 
    GAAGGCTTTA GCAAAGCAAG TTACTTCAGG AACATTCAGG TGGTTGATGG 
    GTCAAACAAC CTCAAGGCAC CTAAAGGACT TGGAACATTC ACTGAACAGT 
    CTAACTGTTA TGATGTTCAA ACCGGAAGCA ATGATGATTG GGGTCATTAC 
    TTTTACTATG GAGGCCCTGG TAAAAACCAG AAGTGTCCAT AAGCTAGGCT 
    CCAAGTAGTA GTGGCTCGTC TCTCGAGTTA TCTTGTCTTG TGAATTCACC 
    TTGTTTCTTT CTACACACAC TCACTCAAAT CCGCCTTCTT GGGTAGTTTT 
    TAGGGATGGT TAAAGTTATG TAATGGTAAA AGTTTGGTGT CTTTTTCTCC 
    ATGTAAGTAG GTGGGGAAGA AGTGGAAAGG TGTGGCTTAA GTTTCTTTGA 
    AAACTCAGAA ACTTTGGCCC TTAGTGTAAT TTTACTTTGT CTCCTTTGTA 
    TTGTGATTTG TTTAAACAAG TGAATGAATC TCTCTTTCTC

    Gene models with high sequence identity

    1. AT1G55360.1 [+] show detail - Protein of Unknown Function (DUF239)
      E-value: 0; Score: 99.94

     

    InterPro Scan Digest

    See the detailed result >

    AT1G55360.1

    Model type
    Protein coding
    Short Description
    Protein of Unknown Function (DUF239)
    Computational Description
    Protein of Unknown Function (DUF239); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT3G13510.1); Has 753 Blast hits to 700 proteins in 28 species: Archae - 0; Bacteria - 15; Metazoa - 0; Fungi - 10; Plants - 728; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR