F18043

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F18043

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Original: F18043

Determination of introduced cDNA(s)

  • RAFL14-55-O06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL14-55-O06 - Resource: pda18773

    full reading [+] show sequence

    Nucleotide sequence: RAFL14-55-O06 - full reading
    ATCAAATTTT TCAGCACCGA AAATGGCAAA CATCGGCGTA GTGACGACAG 
    CGACTAACAA CCAGGTGATC TTCCGTAACT ACGTGAATGG ATTCCCTAAA
    GAATCCGACC TCTACATTGC AGCAAGCACC GTTGACTTAC GTGTACCTCC
    CGGATCCATG GCGGTTCTAG TGAAGAATCT CTACTTATCT TGCGATCCTC
    ATAGCCGCAC TCGCATGGGG AAGCCTGATC CCTCGTCTCC TGCTTCCATG
    GCTCATGCTT TCACTATCGG CAAGCCAATC TCTGGGTTTG GAGTGGCTAA
    AGCAATAGAT TCAGGGCACC CAAATTACAA AACAGGAGAT TTACTTTGGG
    GAAGAGTTGG TTGGGAAGAG TATAGTGTTA TTACTCCAAC TCCTTCTTCA
    CATTTCAAGA TTCATCACAC CGATGTTCCA TTATCTTTCT ACACTGGACT
    TCTTGGTATT CCGGGTCTCA CTGCGTATAT TGGGTTTTAC GAGATATGTT
    CTCCGAAAAA AGGAGAGACT GTTTTTGTAT CAGCTGCATC TGGCGCAGTA
    GGTCAACTCG TGGGACAGTT TGCGAAGATG GCGGGATGCT ATGTCGTTGG
    AAGCGCTAGC AGTGAAGAGA AGGTTGATCT TCTCAAGACT AAGTTTGGGT
    ATGATGACGC TTTCAATTAT AAGGAAGAAA AGGATCTTAG TGCTGCCCTA
    AAGAGGTGTT TCCCAGAAGG AATAGACATA TACTTTGAGA ACGTGGGAGG
    TAAAATGTTA GAGGCAGTGC TCGAAAACAT GAGGACACAT GGCCGAATCG
    CAGCGTGTGG AATGATATCA CAATACAATC TAAAGAAACC AGAAGTTTTA
    CATAACACAG CCACCATTGT TCACAAACGC ATCCGTGTTC AAGGTTTTGC
    TGCTGTCGAA TTCTTTGATA GGTACTCCAA GTTTTTGGAC TTCATACTTC
    CACATGTAAG AGAAGGGAAG TTAACATATG TTGAGGATAT ATCCCAAGGA
    CTTGAGAATG GACCTTCTGC TTTGATTGGA CTCTTCCACG GTAAGAACGT
    CGGGAAACAA CTTGTCGAAG TTGCTCGCGT GTGAGATTTA AACTAACAAA
    TGTTTTATTA CCGTTTGGTT TTAGTTGCTG CTGGAAATAA GATCGGTTTG
    TACAAGCTGT GACAATGTTT TGTTTGTTCG TCAGAAATAA ATGGACTTTG
    TTTGTCTGTA AAAAAAAAA

    Gene models with high sequence identity

    1. AT5G38000.1 [+] show detail - Zinc-binding dehydrogenase family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D NAD(P)-binding domain 1.4e-46
    HMMSmart Polyketide synthase, enoylreductase 0.00082
    superfamily NAD(P)-binding domain 4.3e-51
    superfamily GroES-like 3.4e-27
    superfamily GroES-like 0.00000041
    HMMPanther ALCOHOL DEHYDROGENASE 8.1e-156
    HMMPanther Alcohol dehydrogenase superfamily, zinc-containing 8.1e-156
    HMMPfam Alcohol dehydrogenase, zinc-binding 6.9e-24

    See the detailed result >

    AT5G38000.1

    Model type
    Protein coding
    Short Description
    Zinc-binding dehydrogenase family protein
    Computational Description
    Zinc-binding dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, binding, zinc ion binding, catalytic activity; INVOLVED IN: response to oxidative stress; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding domain (InterPro:IPR016040), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: Zinc-binding dehydrogenase family protein (TAIR:AT5G37940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR