F18109

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F18109

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F18109

Determination of introduced cDNA(s)

  • RAFL03-08-H22 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL03-08-H22 - Resource: pda00149

    full reading [+] show sequence

    Nucleotide sequence: RAFL03-08-H22 - full reading 
    ACCCACATCT TCTAACAGTC TCTCACTTTC TCTCTTCTCT CTCTCTCTTT 
    CTTTTTTGAG TCCGTGAAGG CTAAGTCTGA AAGAATGACG AAGGATGAGT 
    TGACGGAGGA AGAGTCGCTC TCCGGCAAGG ACTACTTAGA CCCACCGCCT 
    GTGAAGACGT TCGAGGTGAG AGAGCTCAAG AAGTGGTCCT TCTACAGAGC 
    TGTCATCGCT GAGTTCATAG CTACTTTGCT CTTTCTATAC GTGACTGTTT 
    TGACAGTCAT CGGCTTTAAG AGCCAGACTG ATATCAACGC CGGCGGCGGA 
    GCTTGTGCCA GTGTCGGCCT CCTAGGCATC TCTTGGGCCT TTGGTGGCAT 
    GATATTCATC CTCGTCTACT GCACTGCCGG CATCTCTGGT GGACACATCA 
    ATCCCGCGGT GACGTTTGGG CTATTCCTAG CTAGCAAGGT ATCATTGGTT 
    AGAGCTGTGT CGTACATGGT GGCTCAGTGT CTCGGAGCCA CTTGTGGAGT 
    TGGTTTGGTG AAAGTCTTCC AGTCGACTTA TTACAACCGC TACGGTGGTG 
    GAGCCAACAT GCTCTCCGAC GGATACAATG TTGGCGTTGG GGTTGGTGCT 
    GAGATTATCG GCACTTTTGT CCTCGTCTAC ACCGTCTTCT CCGCTACCGA 
    CCCTAAGCGA AATGCCCGTG ACTCTCACAT TCCTGTATTA GCACCATTGC 
    CAATTGGATT TTCCGTGTTC ATGGTTCATT TAGCCACAAT TCCAATTACT 
    GGCACCGGAA TAAACCCGGC TAGGAGTTTT GGAGCTGCCG TCATCTACAA 
    CAATCAAAAG GCTTGGGATG ATCAGTGGAT CTTCTGGGTC GGTCCATTTG 
    TGGGTGCAGC CATTGCAGCA TTTTACCATC AGTTTGTGTT GAGAGCTGGT 
    GCAATGAAGG CCTATGGGTC AGTCAGGAGC CAGCTTCATG AGCTCCATGC 
    TTAAATTTGT TATTTCGAAC TAGCGAAGAG GTGAAGAATT CTTTGGGCCA 
    GGAAGGGAGG AAGGAAAAAA AAAAGGGACC CAAATCATAT AAAAGAAAAA 
    ACGAATATTA TTTAAGATGG TCGGTGAGTG ACATTTACTG TGTCTTATTT 
    GTGGCTTTGT GGGGGAGGTT TGTGTGTAAC AATTTGTAAC GTACAAGCAA 
    TGTATGTGTT ATTTGATGC

    Gene models with high sequence identity

    1. AT2G39010.1 [+] show detail - plasma membrane intrinsic protein 2E
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Major intrinsic protein 2.4e-62
    HMMTigr Aquaporin 2.7e-85
    HMMPfam Major intrinsic protein 1.2e-83
    FPrintScan Major intrinsic protein 4.3e-70
    FPrintScan Major intrinsic protein 4.3e-70
    FPrintScan Major intrinsic protein 4.3e-70
    FPrintScan Major intrinsic protein 4.3e-70
    FPrintScan Major intrinsic protein 4.3e-70
    FPrintScan Major intrinsic protein 4.3e-70
    HMMPanther AQUAPORIN-RELATED 4e-187
    HMMPanther Major intrinsic protein 4e-187
    superfamily Major intrinsic protein 3.8e-61
    PatternScan Major intrinsic protein, conserved site 0

    See the detailed result >

    AT2G39010.1

    Model type
    Protein coding
    Short Description
    plasma membrane intrinsic protein 2E
    Computational Description
    plasma membrane intrinsic protein 2E (PIP2E); FUNCTIONS IN: water channel activity; INVOLVED IN: transport, response to nematode; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 2;5 (TAIR:AT3G54820.1); Has 10794 Blast hits to 10789 proteins in 2219 species: Archae - 81; Bacteria - 5177; Metazoa - 1475; Fungi - 441; Plants - 2519; Viruses - 2; Other Eukaryotes - 1099 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR