F18141

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F18141

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F18141

Determination of introduced cDNA(s)

  • RAFL09-15-B21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-15-B21 - Resource: pda01808

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-15-B21 - full reading 
    AGAGAGAAGA GAAGAGAAGA GGAGACTACA CTGCTCCATC ATCTTCTCCT 
    TCTGGGGATT TTTTTTTGGA AAAATCGTTC TGTTACCTTT TTTTTGCCCA 
    TTACTCAAAC CCTAACCCTA ATTTTCTGAA ATCGCAGAGA GAGAGAGAGA 
    GAGGTTTCTT CGAATTCTTT CATCATCAAT TCGCTAACTT TGTTTTTTTG 
    GGGTTAAATC GATTAATCGT TATTTTATTA GATACTGTCG ATCGGAGCTA 
    ATCGACTCTC TCTTAACAAA CCCTAATTTT TTGGTCCTCT CTCATGGCTT 
    CCGCCACTTC CAATAACCCT GCTTCTTCTT CTATGTCTCC TCGTCGTATC 
    AGCGGGAATC ACGGCAGCCC CACCGCTTCC GTAGCACAAT CACCTCGCCG 
    TCCTTCTCGG CAGGTTTCTT CTCCGTGGAC TCAAATCGTC CGCGGCGAAT 
    CAGAGCCGAT CGCCGCCGCC GCCGCTGTAG CCGGTCCTTC CTCTCCTCAA 
    TCCAGGGCTC CGATCGAGCC GATTGCTTCT GTATCCGTTG CTGCTCCAAC 
    TGCTGCTGTT TTGACGGTGG AGGCGGCGGC TGGTGATGAG AAATCGGAAG 
    CATCTGGTGG TCAGGACAAT GCTGGAAAGA AACCAGTTTG GAAAAGGCCG 
    TCTAATGGGG CTTCTGAGGT TGGACCTGTC ATGGGAGCTT CTTCGTGGCC 
    TGCTCTTTCT GAGACCACCA AAGCTCCTTC CAACAAGTCT TCTTCTGATT 
    CGTTAAAAAG TCTCGGTGAT GTACCATCAT CATCGTCAGC ATCATCATCT 
    GTCCCCGTTA CTCAGGGAAT TGCAAATGCT TCTGTTCCTG CACCAAAGCA 
    AGCTGGCCGT GCAAACCCTA ATCCAACTCC AAATCACTCG CGCCAGAGAT 
    CATTTAAACA ACGCAATGGC GCCTCTGGAT CAGCTAATGG TACTGTTTCT 
    CAACCATCAG CGCAGGGTTC ATTTACCGAA TTGCCTTCGC ACAACCCTTC 
    TCCTAGAGGC CAAAACCAGA AGAATGGCTT TGCGTCACAA AACCATGGTG 
    GTACTGAAAA CCCATCTCAA CGAGACTCCT ACAGGAACCA AAACGGTAAT 
    CATCACCAAA GTCACGGTGG CAGGCGCAAT CAGGAGCACG GGAATCAAAA 
    TTGGACTTTT CAAAGAAGTT TTAACGGGAG AGAAGGAAAT GCGCAATCGC 
    AAAGAGGTAC TCCAGCTTTT GTAAGACATC CATCACCAAC TGTGCAGCCA 
    ATTCCTCAGT TTATGGCAGC TCAGCCTTTT CCCAGTCATA TACCCTTCCC 
    TACTGAATTG GCACAGTCGT CGTATTATCC CCGTATGCCT TACATGACAC 
    CTATTCCGCA TGGTCCGCAG TTCTTCTACC ATTATCAAGA TCCTCCGTTA 
    CACATGAAAC TGCATAAGCA AATACAATAT TATTTTAGTG ATGAAAATTT 
    GATTACAGAC ATATACCTTC GAGGGTTCAT GAATAATGAG GGTTTTGTTC 
    CGCTACGTGT GGTAGCTGGT TTCAAAAAGG TTGCAGAACT TACAGATAAT 
    ATCCAGCAGA TAGTGGAGGC TCTTCAAAAT TCACCTCATG TTGAAGTGCA 
    GGGTGACTTC ATAAGGAAGC GCGATAATTG GCAAAATTGG GTGCTAAGGA 
    GGAACCCTAC AGGTTCCGGC CCCCAATCTG TTGATAGGGC AGATGCAGTG 
    GCAAAACGAC TTGGAAACTT GTCAGTTGAT CAGAGTTCGG CTGATCCCAT 
    TGGTGGTTCG AGCAGTCAGT TGCAACCTAC AGAAGCTCTT TCAGATGATC 
    AGCAACAGTC TTCTAGTACT GCTCCAGTGA GCAACCACAA CGCCCCAGAT 
    GGTGCAAACC GTTGAACCAT CAAGTTTGGG GGCTGTTGGT TAGTGTTGGA 
    CATGAATATA TTATTTTGTC TTGCCCAAAA TGAGGAAAAC AATAATGAAG 
    GGGAACCAAA AAAAAAAAAA AAA

    Gene models with high sequence identity

    1. AT4G35890.1 [+] show detail - winged-helix DNA-binding transcription factor family protein
      E-value: 0; Score: 99.85

     

    InterPro Scan Digest

    Program Description E-value
    superfamily "Winged helix" DNA-binding domain 2.9e-30
    ProfileScan RNA-binding protein Lupus La 25.024
    HMMPfam RNA-binding protein Lupus La 5.7e-22
    Gene3D Winged helix-turn-helix transcription repressor DNA-binding 3e-22
    HMMPanther LUPUS LA PROTEIN-RELATED 2.5e-41
    HMMSmart RNA-binding protein Lupus La 3.7e-22

    See the detailed result >

    AT4G35890.1

    Model type
    Protein coding
    Short Description
    winged-helix DNA-binding transcription factor family protein
    Computational Description
    winged-helix DNA-binding transcription factor family protein; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA-binding protein Lupus La (InterPro:IPR006630); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT5G66100.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR