F18206

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F18206

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F18206

Determination of introduced cDNA(s)

RAFL09-23-D14 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-23-D14 - Resource: pda05714

full reading [+] show sequence

AAAACACAAA CCCTATCTTT TCTTCTTCTT CTTCTTCGTT CAGTCTTCAC 
TTTCTTTTCT TTTCTCCGCC ACCACACAAA TACATTCTTC ATTCTTTGTA 
ACTTTCACGC TATTCTTCCT CAATATATTC ATTCGACCTC CTCTCTTCAT 
TCTTAATTTC TCAAAAATCT TATCTTTCTC CCTCATTTTT CCCGTCGAGG 
GTTCCTTAAT CTCCTTCCTA GGAACGTTTC ATCGATTTCA TATTTGCTTT 
CCTTAATCCA CAACGTTTCT TCCTTCGTTT TTTTCTGCAA TTTTGTTTTC 
CTTTACACCA AATTCATCTC TTAGTCTTGT CCAATTTTCG ATTTTTTTTC 
CGACAATCCT GATTGTTTGT TTTTTTATCT GTCGGGATTT CGAATGGCGC 
TTGCGTATGA TCCTCTCTTC ATTACATCGG ACAAATCTTT GTCCGCCTTT 
GATGTTGCCT CTTCACCGCC TCAGCCCATG AATTTAACAC AAGACGAGCT 
CAAACGTATC GCCGCTTACA AAGCCGTGGA ATTCGTCGAG TCCGGCATGG 
TTCTCGGTCT CGGAACCGGC TCCACCGCCA AACACGCCGT CGACCGAATC 
GGCGAGCTTC TCCGTCAAGG CAAACTCGAG AACATCGTTG GTATACCAAC 
GTCTAAGAAG ACGCAGGAGC AGGCTCTGTC TCTCGGCATC CCTCTCTCTG 
ATCTCGACGC ACACCCTGTC ATCGATCTCT CCATCGACGG CGCAGACGAG 
GTCGACCCTT TTCTCAACCT GGTAAAAGGC AGAGGAGGGT CTCTGCTTCG 
AGAGAAGATG ATCGAAGGAG CTTCTAAGAA GTTTGTGGTG ATTGTTGACG 
ACTCCAAGAT GGTGAAGCAT ATTGGTGGAA GCAAGCTTGC TCTTCCGGTG 
GAGATAGTGC CCTTTTGCTG GAAGTTCACG GCGGAGAAGC TCCGGAGTCT 
GCTGGAAGGA TACGGGTGTG AAGCGAATCT TCGGTTGGGA GAGAAAGGGA 
AGGCCTTTGT GACAGACAAT GGGAATTACA TAGTGGATAT GCATGTGGAA 
GAGGATATGG GAGATTTGGG AGCAGTGAGT GATGCGATTC TGAGGCTACC 
GGGAGTAGTG GAACATGGGA TGTTTCTGGA TATGGCTTCT ACTGTTATCA 
TTGCAGGTGA GCTTGGTGTT AAGATCAAGA ACAAACACTG AAACACACAC 
CACACCTCTT CTCGTTGATT TTGGCCTTTA TGTATTAGGA GACAGAGGAT 
TATGGTTTGC TCTATGGTTT AGATGATATG AGATTAGGTT TTGGATGATG 
TCACTGTGAG GAGGATGAAT GACTTTCTTT TGACAGAGTT TTGGATGCAT 
TGACATCGTC GTCATCATCA TCAATCAATC TTGTAAACAG CATTTTGCTT 
CTTCATTGCC TTTGTTGTGT TTGAATGCTC TTCTTTTACT ACTGGGCCTG 
TGTTGGGCTT TGCT

Gene models with high sequence identity

AT2G01290.1 [+] show detail - ribose-5-phosphate isomerase 2
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMTigr	Ribose 5-phosphate isomerase, type A	4.9e-135
HMMPfam	Ribose 5-phosphate isomerase, type A	3.3e-63
superfamily	NagB/RpiA/CoA transferase-like	1.5e-42
superfamily	D-ribose-5-phosphate isomerase (RpiA), lid do	3.2e-19
Gene3D	no description	9.9e-49
HAMAP	Ribose-5-phosphate isomerase, type A, subgroup	31.386
HMMPanther	Ribose 5-phosphate isomerase, type A	7.1e-118

See the detailed result >

AT2G01290.1

Model type: Protein coding
Short Description: ribose-5-phosphate isomerase 2
Curator Summary: Cytosolic ribose-5-phosphate isomerase. Knockout mutation causes chloroplast dysfunction, late flowering and premature cell death.
Computational Description: ribose-5-phosphate isomerase 2 (RPI2); CONTAINS InterPro DOMAIN/s: Ribose-5-phosphate isomerase, type A, subgroup (InterPro:IPR020672), Ribose 5-phosphate isomerase, type A (InterPro:IPR004788); BEST Arabidopsis thaliana protein match is: Ribose 5-phosphate isomerase, type A protein (TAIR:AT1G71100.1); Has 5035 Blast hits to 5035 proteins in 1937 species: Archae - 235; Bacteria - 3542; Metazoa - 112; Fungi - 145; Plants - 141; Viruses - 0; Other Eukaryotes - 860 (source: NCBI BLink).
Link: InterPro Scan - TAIR