F18210

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F18210

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F18210

Determination of introduced cDNA(s)

RAFL06-83-A22 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-83-A22 - Resource: pda03842

full reading [+] show sequence

GAGACTCTAT TTACTCGCCG GCGGAAGAAC AAAATGGCGG GAAGAGCGAT 
TTTCTCTGTA TCTTGTTCAT CTACTCCTTC CTTGTGTATC CCTTATTCAA 
CTGCTTCGTT TTCATCGATG AATCGACTGG CGCTCCCCGC CGTCCGGATT 
TCTCCCCGAA CCAACAGATT TCCCAGGATT CACTGCTCTA TGTCTGCTAA 
CGACATCAAA GCGGGAACCA ATATCGAAGT CGATGGTGCT CCTTGGCGTG 
TTCTTGAGTT TCTTCATGTT AAACCAGGAA AAGGTGCGGC ATTTGTGAGA 
ACTAAGATCA GGAACTATGT GAATGGTAGC ACAGTCGAGA GAACATTTCG 
TGCTGGAATT TCTGTTGAGG AAGCTAATAT ATATAAAGAA ACCAAACAAT 
TCACATACAA AGATGGGTCT CAGTTTGTTT TCATGGATTT GACCACATAC 
GAAGAAACAC GTCTTAACGA ATCTGATATG GGTGAGAAGA CGAAATGGTT 
GAAAGAAGGA ATGGATTGCA TTTTGCTCTA TTGGAAAGAC AAGGTTATCG 
ATTTCGATCT ACCGATTACA GTTAAGCTAA AAGTGGTTGA CGTTGATCCT 
GGCCTTCGCG GTGATACTGT GCAAGGTGGA TCAAAACCGG CGACAATGGA 
AACGGGTGCA ATAGTTGCTG TACCACTCTT TATTAACGTC GGTGAAGAGA 
TATTTGTGGA CACAAGAACT GGTGCATACA TGAACCGAGC GTGATCCGGG 
TCTACTACAC CTAGTTAATT GGGTCGTTAA CAACAAGGCA ATGATACATC 
TTTTTTGTAT ATGAGAATGT TCGAATCCGG GGACACATGT TTGTTTTTCT 
GAACATCGAG AGACAATTTT TCGATTAAAT AAATTTATAT ACAAAAAAAA 
AAAAAAAA

Gene models with high sequence identity

AT3G08740.1 [+] show detail - elongation factor P (EF-P) family protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
PatternScan	Translation elongation factor P/YeiP, conserved site	0
HMMPfam	Translation elongation factor, KOW-like	1.7e-25
HMMPfam	Elongation factor P, C-terminal	5.4e-24
HMMPfam	Translation elongation factor P/YeiP, central	4.6e-19
HMMTigr	Translation elongation factor P	1e-94
Gene3D	Translation protein SH3-like, subgroup	5.1e-18
Gene3D	Nucleic acid-binding, OB-fold	1.8e-14
Gene3D	Nucleic acid-binding, OB-fold	2.6e-17
HAMAP	Translation elongation factor P	34.782
superfamily	Nucleic acid-binding, OB-fold-like	2.4e-20
superfamily	Translation protein SH3-like	9.2e-20
superfamily	Nucleic acid-binding, OB-fold-like	1.5e-17
HMMSmart	Elongation factor P, C-terminal	2.3e-29

See the detailed result >

AT3G08740.1

Model type: Protein coding
Short Description: elongation factor P (EF-P) family protein
Computational Description: elongation factor P (EF-P) family protein; FUNCTIONS IN: translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor P (InterPro:IPR011768), Translation elongation factor P/YeiP, conserved site (InterPro:IPR013852), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Translation elongation factor, KOW-like (InterPro:IPR013185), Translation protein SH3-like, subgroup (InterPro:IPR014722), Elongation factor P, C-terminal (InterPro:IPR015365), Translation protein SH3-like (InterPro:IPR008991), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Translation elongation factor P/YeiP, central (InterPro:IPR001059), Translation elongation factor P/YeiP (InterPro:IPR020599); BEST Arabidopsis thaliana protein match is: elongation factor P (EF-P) family protein (TAIR:AT4G26310.1); Has 10499 Blast hits to 10498 proteins in 2700 species: Archae - 4; Bacteria - 7892; Metazoa - 1; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 2521 (source: NCBI BLink).
Link: InterPro Scan - TAIR