F18218

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F18218

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • dark green (PATO:0001249)
    (Cauline leaf::Color::dark)
rosette leaf (PO:0000014)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F18218

Determination of introduced cDNA(s)

  • RAFL09-63-L08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-63-L08 - Resource: pda08572

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-63-L08 - full reading 
    CTCTCCGCCT GTTCTCCATT GATCTAATCT AACTCGCTCA TCAGAATCAT 
    CTCTTCATCG TTAATCCTCT TCCTTCTCAC TCACCATGTA TCGTTTCGCT 
    TCTAACCTCG CCTCCAAGGC AAGGATTGCT CAAAACGCTC GCCAGGTTTC 
    CAGCAGAATG AGCTGGAGCA GGAACTATGC AGCGAAAGAG ATTAAGTTTG 
    GTGTTGAAGC TCGAGCTTTG ATGCTTAAGG GTGTTGAAGA TCTTGCTGAT 
    GCTGTTAAAG TCACCATGGG TCCCAAGGGA CGTAATGTTG TGATTGAGCA 
    AAGTTGGGGT GCTCCTAAAG TGACAAAAGA TGGTGTTACT GTTGCCAAAA 
    GTATTGAGTT CAAAGACAAA ATTAAGAACG TTGGTGCTAG TCTTGTGAAG 
    CAGGTTGCAA ATGCTACTAA TGATGTTGCT GGTGATGGTA CTACTTGTGC 
    TACTGTCCTC ACCCGGGCTA TATTTGCCGA AGGATGCAAA TCAGTTGCCG 
    CAGGAATGAA TGCAATGGAC TTGCGAAGAG GTATTTCCAT GGCAGTTGAT 
    GCTGTGGTGA CAAACCTTAA AAGCAAGGCT AGGATGATCA GCACATCTGA 
    AGAGATTGCT CAGGTTGGAA CCATTTCTGC TAATGGAGAG AGGGAAATTG 
    GTGAACTTAT TGCCAAGGCT ATGGAGAAGG TTGGCAAAGA AGGTGTTATC 
    ACAATCCAAG ATGGAAAGAC ATTGTTTAAC GAGTTGGAAG TTGTAGAGGG 
    GATGAAATTG GACAGAGGTT ATACTTCACC ATACTTTATC ACTAATCAAA 
    AAACCCAAAA ATGTGAACTA GACGATCCTC TCATTCTTAT CCACGAGAAG 
    AAGATCTCAA GCATCAACTC TATAGTGAAA GTGTTGGAGT TGGCTCTGAA 
    GAGGCAAAGA CCACTATTGA TTGTTTCTGA AGATGTGGAA AGTGATGCTC 
    TTGCAACTCT TATCCTTAAC AAGCTCCGTG CCGGAATTAA GGTCTGTGCC 
    ATCAAGGCCC CTGGGTTTGG AGAGAATAGG AAGGCCAATT TGCAAGACCT 
    TGCTGCCCTT ACTGGTGGAG AGGTTATCAC AGACGAGCTT GGCATGAATC 
    TGGAGAAGGT GGACCTAAGC ATGCTAGGAA CCTGCAAAAA GGTTACAGTC 
    TCCAAGGACG ACACTGTTAT TCTTGATGGG GCTGGCGACA AGAAAGGAAT 
    TGAGGAAAGA TGTGAACAGA TTAGGTCAGC AATTGAACTG AGCACCTCAG 
    ATTATGACAA GGAAAAACTG CAAGAAAGGT TGGCTAAGCT CTCTGGAGGT 
    GTTGCAGTGT TGAAGATTGG AGGAGCAAGT GAAGCTGAAG TTGGTGAGAA 
    GAAAGACAGA GTGACAGATG CTTTGAATGC CACTAAAGCA GCAGTTGAAG 
    AGGGTATTTT ACCAGGAGGA GGTGTGGCTC TTCTATACGC AGCAAGAGAG 
    TTGGAAAAAC TTCCAACAGC CAACTTTGAC CAGAAGATTG GTGTCCAGAT 
    TATTCAGAAC GCATTGAAGA CTCCTGTTTA CACAATCGCT TCAAATGCTG 
    GAGTTGAAGG TGCTGTTATT GTTGGCAAGC TCTTGGAGCA AGATAACCCA 
    GACCTCGGTT ATGATGCTGC TAAAGGTGAA TATGTGGATA TGGTGAAAGC 
    TGGAATCATA GACCCTCTGA AAGTGATCAG GACAGCTTTG GTTGATGCTG 
    CGAGTGTGTC ATCTTTGTTG ACGACAACGG AAGCTGTAGT GGTTGATCTT 
    CCGAAAGACG AAAGCGAGTC AGGAGCAGCA GGAGCAGGCA TGGGTGGAAT 
    GGGAGGCATG GACTACTAGA TCCACTAAAT TCTGTCTTTT GTTTTCACCA 
    ATCACCATCT TAACTTGAGA AGAGAGATAC GATTCTTTTA GGAGTTTTAG 
    TCTTCGTCTT TGCCTTATTG TTGCTCAATA ACCTCAAAAG TTTTACAATA 
    AACAGAGCAC ACTTGGCAAT GTTACGAGAC ACACTATTAG CATT

    Gene models with high sequence identity

    1. AT3G23990.1 [+] show detail - heat shock protein 60
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Chaperonin Cpn60, conserved site 0
    HMMTigr Chaperonin Cpn60 0
    HAMAP Chaperonin Cpn60 37.917
    Gene3D no description 3.4e-83
    Gene3D no description 6e-36
    FPrintScan Chaperonin Cpn60 6.4e-71
    FPrintScan Chaperonin Cpn60 6.4e-71
    FPrintScan Chaperonin Cpn60 6.4e-71
    FPrintScan Chaperonin Cpn60 6.4e-71
    FPrintScan Chaperonin Cpn60 6.4e-71
    superfamily Chaperonin Cpn60/TCP-1 1e-73
    superfamily GroEL apical domain-like 1.6e-62
    superfamily GroEL-intermediate domain like 1.3e-19
    HMMPfam Chaperonin Cpn60/TCP-1 1e-117
    HMMPanther CHAPERONIN-60KDA, CH60 0
    HMMPanther Chaperonin Cpn60/TCP-1 0

    See the detailed result >

    AT3G23990.1

    Model type
    Protein coding
    Short Description
    heat shock protein 60
    Curator Summary
    mitochondrial chaperonin HSP. assist in rapid assembly of the oligomeric protein structures in the mitochondria.
    Computational Description
    heat shock protein 60 (HSP60); FUNCTIONS IN: copper ion binding, ATP binding; INVOLVED IN: response to cadmium ion, response to cyclopentenone, chaperone-mediated protein complex assembly, response to heat, mitochondrion organization; LOCATED IN: cytosol, cytosolic ribosome, mitochondrion, plasma membrane, mitochondrial matrix; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60, conserved site (InterPro:IPR018370), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: heat shock protein 60-2 (TAIR:AT2G33210.1); Has 33706 Blast hits to 33652 proteins in 8680 species: Archae - 676; Bacteria - 21745; Metazoa - 1618; Fungi - 1515; Plants - 790; Viruses - 2; Other Eukaryotes - 7360 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR