F18226

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F18226

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F18226

Determination of introduced cDNA(s)

  • RAFL14-02-N04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL14-02-N04 - Resource: pda18054

    full reading [+] show sequence

    Nucleotide sequence: RAFL14-02-N04 - full reading 
    AGTTCGGCAA CCAAACCAAA CATTCAGAGA GACACAACAC AACCACATCA 
    TCACACGTTT CTCTCTCTCT CTTTCCTCTC CGTCGTCTCT CTCTCTCTAG 
    CCACCACCAA AATCCTTAAA ACCTAGACTT TTCTCTTCCA TCGATGGCGG 
    CTAATAACAG ATCCGATCAT GGGTCAGACG AAAACACAAG ACTTTACAAT 
    CCTTACCAAA ACTACGAAGT CCCAATCAAC AAATCTCAGT ACCTTTACAA 
    GCTTCCTACC TCCCCTGAGT TTCTCTTCAC GGAGGAGGCT TTAAGGCAAC 
    GTAGATCTTG GGGTGAGAAT CTCACTTTCT ACACCGGAAC AGCTTACCTC 
    GGTGGCTCCG TTGCCGGAGC TTCTGTTGGA GTCATCACTG GAGTCAAAAG 
    CTTCGAATCT GGCGACACTA CTAAGCTCAA AATCAACAGG ATCTTGAACT 
    CTTCTGGTCA AACTGGTCGA ACTTGGGGTA ATCGGATTGG TATCATTGGA 
    TTGGTTTACG CAGGGATCGA GAGTGGTATT GTGGCTGCCA CGGATAGAGA 
    TGATGTTTGG ACCAGTGTGG TGGCTGGTCT TGGAACCGGA GCTGTTTGTA 
    GAGCGGCGAG AGGAGTGAGA TCTGCAGCTG AACCGAATAA ATTCCCAGAG 
    ATTCCTCTCA TTTAATCACT TCAGATTCGA AAAAAGTTCT CTCTTTTTCC 
    CAAAAAAAAC TTTCTCATAC AATGGACTCT ACTACCACAC CTCCTTCTCT 
    CCGTTCGAAT ACTAGATCCG CTTTGCGTCT AGCTCGAAAC AACAAAACTC 
    TCGTAAAATC TCACATTCCA TCTCTCGATT TGGTTTTATT GTCTCCGAAG 
    AACAACAACG GTACTCCTTA CCCATCACCT GTTTCTCTCA GTTCACCATC 
    TTCTCGTGTT ACTCTTCGTG AGATTCTCCT TTTATCTCCT TCCCCTCTTC 
    GTAAATCGAG AACCCGTTTA AGCAATCGGT TCGATATGGA AGCTGCGGAG 
    GCTGCTGTGA CGGCACGACG GAGTAAGACG AAGGGAGGGC AAAATGGTCT 
    TTTGGCCTCG CCGTCGCCGA GGAATTTCCG GAGGTCGAGA CTAAGGTCGG 
    AGGCGATGGT AGATACAAAG GAAAATACGG AGCCAATTGT TGTCGTGACC 
    GATGAAAAGA AACAAAACCA GAGGAAACAG AAGAAGTTGG GTCGATCTAA 
    GAAGGAGAAG CACAGTTCTG TTCCTCTGTT AGCTTCTCCT AGTCCATCTT 
    CAGATCAACC TCAAGATGTT TGTCAAGGTG ATTTAGAGCG GATTAGAGAG 
    AATATAAGCG ATTTGATTAT GTGGAGAGAT GTTGCGAAAT CAACACTTTG 
    GTTTGGTTTT GGCTGTATAT GTTTCCTATC TACTTGCTTT GCTGCTAAAG 
    GATTTAACTT TAGTGTTTTC TCAGCGATCT CCTATCTTGG ACTTTTGTTT 
    CTTGGGGTAT CGTTCTTGTC AAATACTCTT CGCCAAAGGG TTACTGAAGA 
    AGCGCGGAGA GAGCTTAAAT TGAGTGAAGA TGATGTATTA CGAATAGCTA 
    GACGAATGCT TCCCATCACC AATTTAGCAA TTTCAAAGAC GAGTGAGCTT 
    TTCTCTGGTG AACCAGCAAT GACACTCAAA GTGGCACCTT TTGTTCTAAT 
    GGGAGCTGAG TATGGTTACC TCATAACATT GTGGAGATTA TGTGCTTTTG 
    GTTTCTTCCT TAGCTTCACT ATTCCAAAGC TATATTCATG TTACGCAAGT 
    CAGCTTAACC AAAAAGTTGA GTGTGCACAA AGGAGATTTG TTGAAGCTTG 
    GGGAGTTTGC ACACACAAGA AATTCGTAGC AGGCTCTGCA GTTACTGCAT 
    TCTGGAATCT AACTTCTCTC AAGACCCGTT TTATTGCAGT GTTTATCATA 
    GTAGTAGTAA TCAGATACAG ACGACAGAAT CTACAGTTAG ATTCCGAGGA 
    TGAGGAGGAG AAGAAGCAAC AAGAAAAAAC TCACCCGGAG CAACAAAAAT 
    CGCCGGAGGA TAAGTCAACT TCACCGCGGT CAGCAGAAGA AGAGCAAGCG 
    TTGGTGCTAG TTGCAGAAAC CAAAGCACCA AAGAAGCTTT ATTAGTCTAG 
    TCACTAGTGT CTTTTCAGTA TCCACCTGTG TAATAATATT TCACATTTAC 
    GTAATAATAA ATAAAGAGCA GTCATTAATA CCAAAA

    Gene models with high sequence identity

    1. AT4G28430.1 [+] show detail - Reticulon family protein
      E-value: 0; Score: 99.87

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Mitochondrial inner membrane translocase complex, subunit Tim23 1.3e-76
    HMMPfam Reticulon 8.6e-29
    HMMPfam Mitochondrial inner membrane translocase complex, subunit Tim17/22 1.3e-21
    HMMPanther RETICULON3 3.6e-05
    HMMPanther Reticulon 3.6e-05
    HMMPanther TIM23 1.7e-64
    Coil coiled-coil 0
    ProfileScan Reticulon 11.364

    See the detailed result >

    AT4G28430.1

    Model type
    Protein coding
    Short Description
    Reticulon family protein
    Computational Description
    Reticulon family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, chloroplast; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: Reticulon family protein (TAIR:AT2G20590.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR