F18241

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F18241

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F18241

Determination of introduced cDNA(s)

  • RAFL05-15-M17 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-15-M17 - Resource: pdz87495

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL05-15-M17 - 5 prime EST 
    AATTAATTTT CTCACTCAAT AATGAAGAAA ACTGCGAAAG CGTGCAGATA 
    AGAGAGATCT CTCTGAACAG ATATTATAGT TGATAGTTTG CGTACTAGGA 
    GTCTGTGAAA GCTTGCACAG GAAGAAAGCA AATCGGGAAA GAAAGGAATC 
    TGAATCGGAG AAGCAATCGA GGTTTACGAT TACCAAATTC TGATCTAATC 
    TGATTAATTG TGGTGATTTC CGATGGAAGA AGACGGTGGT GGCGGCGGTG 
    CGAAAGTTGG AATGCTGGAG AATTTCATGA AGACGCATCA GAGTTCTTTG 
    AAATCGTTAT TCCAGAGAAA GAAATCATCC TCTGGTCGTG ATGGAGATGC 
    TTCTCCGTCG CCTATCGCTT CCCCGAAACC TATTCCGCAG CTCTCTCTTC 
    TCGCCAATTC CGTCGTCTCC CGCTGTTCAA AGATCCTGAA CATTCAAACA 
    GAAGATCTGC AGCATCATTT TGATGTAGAG TTGCCTGAGA GTGTTAAGCA 
    ACTATTGACA TATGCAAGGA ACTTTTTAGA GTTCTGCTCT TTTCAGGCAC 
    TTCATCAAGT GATGAAAAAA CCTGATTACT TGAGTGATCA AGAGTTCCGT 
    CAGCTAATGT TTGACATGAT GCTTGCTTGG GAGACTCCCA GTGTCACAAG 
    TGAGCANGAA AACAA

    Gene models with high sequence identity

    1. AT5G23390.1 [+] show detail - Plant protein of unknown function (DUF639)
      E-value: 0; Score: 99.85

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL05-15-M17 - 3 prime EST 
    AGTCAAAAAA CGAGTTAGTT CGTCTCATAT TTATGAATAA ACCCGAATCT 
    TACTTAAAAA GGGGAAAAAA AAAAGAAGAA GAATAAAAAA TTCTAATATC 
    AAAACAATAT GTCTAGAAAG A

    Gene models with high sequence identity

    1. AT5G23390.1 [+] show detail - Plant protein of unknown function (DUF639)
      E-value: 2e-58; Score: 99.17

    AT5G23390.1

    Model type
    Protein coding
    Short Description
    Plant protein of unknown function (DUF639)
    Computational Description
    Plant protein of unknown function (DUF639); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF639 (InterPro:IPR006927); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF639) (TAIR:AT1G48840.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR