F18303

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F18303

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: F18303

Determination of introduced cDNA(s)

  • RAFL09-86-D02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-86-D02 - Resource: pda08947

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-86-D02 - full reading 
    AGTGCGACTT TGCCTCTTTT CAATGCCCAA TTTCTTGAGA TTCTGGCTGT 
    TCTGCATCCA AATATTAAAC AATCAATTCC TTTTATAAAA AGCAAAAGAC 
    AGAAATATTT ATTATTAAGC TAAAGAATTG ATCAAAAAAC TCGATTCACT 
    TTTCTCAAAA ACCCGAATAT AATCTCATTC CCAATAGCTT CCACTTCCAT 
    CGAGAGATTT TCTTTCTTTG TTTTTTTCTG TGATTTTCTC CAATGGCTAA 
    CTCCAAGAAG CAAGCATGGT TTTTTTATAC CACAGGCTTA CCAAGTGACA 
    TAGAAATCGA AGTTGATGAT ATAACATTTC ATCTTCATAA GTTTCCTCTA 
    ATGTCAAAAA GCAAAAAACT TCACCAACTA ATAACAGAGC AAGAACAGAG 
    TAAAGTTTAT TCTCACATCA AGCTCGAGAA TTTTCCAGGA GGTTCAGAGA 
    TTTTCGAGAT GGTGATAAAG ATAAGCTACG GTTTCAAAGT CGACATCTCT 
    GTTTCCACAG CTGTTCCACT CCGTTGCGCC GCCGAGTATC TAGAAATGAC 
    GGAAGAGTAC TCACCGGAGA ATCTCATTTC AAAAACAGAG AAGTTTCTTT 
    CAGAGTTCGT CTTCACTAAC GTACAAGAAT CCATCAAAGC GTTGAAAGCT 
    TGTGAATCAG TCTCGTCTTT AGCTGAATCA CTCTGTATAA CGGAACAGTG 
    TATAGACTCC ATCGTCTTCC AAGCTTCCTC AACCGATCCG TCGTCGTTTT 
    ACGGTTGGCC AATAAACAAC GGAGGTATAT TCACCGTTGA CCGGAAGAAA 
    CAGAGCAAAG ATTCGAAAAC AGAGCTTTGG TTCGAAGATC TAACGGAGTT 
    GAGTTTTCCA ATCTTCAGAC GTGTGATCTT ATCCATGAAG TCGAGTGTCC 
    TGAGTCCTGA GATTGTAGAG AGATCTCTAC TTACTTACGC GAAGAAACAC 
    ATTCCAGGAA TCTCGCGTTC ATCGTCAGCA TCTTCATCTT CTTCTTCTTC 
    TTCCACCACC ATAGCTTCCG AGAATCAACA AAGAGAATTA TTAGAGACGA 
    TAACTTCAGA TCTTCCATTA ACTGCGACGA CTACGAGATC TCTCTTCGGT 
    TTGTTACGAG CCGCGATCAT TCTCAACGCC TCCGAGAATT GCAGGAAGTT 
    TCTAGAGAAA AAAATCGGAT CGAATCTTGA GAAAGCTACG CTTGATGATC 
    TTCTCATTCC AAGTTACTCG TATCTCAACG AAACGTTATA CGATATTGAT 
    TTGGTGGAGA GACTCTTACG TCGTTTTCTC GAAAACGTCG CCGTGTCGTC 
    GTCGTCATTG ACGGTGGTTG GGAGATTGAT CGACGGAGTT CTCGGTGAAA 
    TTGCATCGGA CGCTAATCTT AAACCGGAAC AGTTTTATAA TCTGGCGGTT 
    TTGCTTCCGG TTCAAGCACG GGTTTACGAT GATGGACTAT ACAGAGCCGT 
    CGATATATAT TTCAAGACTC ATTCATGGAT ATTGGAGGAA GAGAAGGAGA 
    AGATTTGTAG CGTGATGGAT TGTAGAAAAC TGACTGTTGA AGGATGCACA 
    CACGCGGCAC AAAACGAGCG TTTACCACTA CGAGCCGTCG TACAAGTTCT 
    GTTTTTGGAG CAGCTACAGC TCCGGCAAGT AATCACTGGG ACTTTACTGA 
    CGGAGGAAGA CGGTGATAAA ACGGTGGTGG ACTTGGGTAG ATGGAAGGAA 
    GCGGTGAAGG AGAATCAGGT GCTTCGTTTG GATATGGATA CGATGAGGAC 
    ACGAGTGAAC CAGCTAGAGA AAGAATGCTT GTACTTGAAG AAAGTGATCG 
    CGAAGATCGA CAAAGAAAGT TTGTTGAAGG CGAAGCATGG GGCGGGGAAA 
    TGGTCAATCG GGAAGAAGTT CGGATGCAAA TTTTCGGCTC AAGTTTGTGG 
    TTCACAGGAG GCAACGATGG TCGATAGAAG ATCACGACGT TTTCTTAGTT 
    AGTACATAAA TCAGAATCAT CTTGTGCTTC TAAAAATTGT ATTTTTACTT 
    CTTCTGTATA TCTTAAAGAA AAAGATTGAT ACTTTAGATT GAATGGAACT 
    CTAAAACACA CCCTGATGGA CTTGTTATTC AGAGAATCAT AGTATAATGA 
    TTTAGAGATT ATGAATGTAA ATTTGTAAAA AC

    Gene models with high sequence identity

    1. AT3G50840.1 [+] show detail - Phototropic-responsive NPH3 family protein
      E-value: 0; Score: 99.95

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    HMMPfam NPH3 8.3e-83
    HMMPfam BTB/POZ 4.8e-07
    superfamily BTB/POZ fold 8.4e-15
    ProfileScan BTB/POZ-like 9.806
    Gene3D BTB/POZ fold 1.2e-05
    HMMSmart BTB/POZ-like 0.00023

    See the detailed result >

    AT3G50840.1

    Model type
    Protein coding
    Short Description
    Phototropic-responsive NPH3 family protein
    Computational Description
    Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT5G66560.1); Has 881 Blast hits to 860 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 3; Plants - 864; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR