F18317

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F18317

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F18317

Determination of introduced cDNA(s)

  • RAFL07-12-A13 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL07-12-A13 - Resource: pda04165

    full reading [+] show sequence

    Nucleotide sequence: RAFL07-12-A13 - full reading 
    GGTCGTGTTC TTCTTATAAG GGTTTTTGTT TATAATTTGG TAATCGAAAA 
    AGAGAGATTT GATAAAATCC TTTGTGTTGA AGGAAAAAAA AATCATATAG 
    GTAACGTTTG ATACAAGTAA AAAAAAAAAA TTTCCATCAC TTTCTTGGGT 
    AAAAAAAACA TGGGTTAGAG GAAAAACTGG GGAAAAGATT TTAGATTAAG 
    TGCGTAAAGA ATTCTGATTC CTTCGTCTCC GATCTCTCAT TTTTCTGGAG 
    AAATTGTCAA AAATTTCAGA TATCTATATT GTCTTGGAAC TGAAGATTCA 
    TCGAAAGATT GGTGAGTTTT ATTCGCTGCT TATCGCTTGT GGCAATCACA 
    TCATCTGTGT TATGCATCCA AGTAATGGTG TCACATAAAG TCTTAGAATT 
    TGGAGATGAT GGTTACAAAT TACCTGCTCA AGCTCGAGCT CCGAGATCAC 
    TCCGGAAGAA GCGCATTTAC GAAAAGAAGA TACCAGGAGA TGATAAGATG 
    TGCGCGATTG ACTTATTGGC CACCGTAGCT GGAAGCTTGC TTCTCGAGAG 
    CAAAAGTCCG GTAAACGCGT GTCTAGTTGT ACAAAATACT GTAAAGAATG 
    AATACCCGGC TGATGAAAAC CCCGTAAAGG CGGTTCCTTA TTCGGAATCC 
    CCGAGCCTAT TTGACAATGG CAAGTGTGGA TTTAGCTCTG TGATAACAAA 
    TCCTAATCAC TTGTTGGTAG GTGACAAAGT AGGAAAGGAG GTGGAGGGTT 
    TTAGTAGTTT GGGTGTGAGT GGTGATGTAA AGCCTGATGT TGTAGCTAGT 
    ATAGGTAGTA ACAGTAGTAC CGAGGTGGGA GCATGTGGGA ACGGTAGTCC 
    CAACGAGTCT CGGGATGATG TAAATTTGTT TAGTAGAAAT GATGATGATG 
    AAAACTTTTC GGGTTACATT CGAACTCGTA TGACTAGGCC TGTGCCTCGT 
    ATTGGAGACA GAAGAATTAG GAAGATATTG GCATCTAGAC ATTGGAAAGG 
    AGGTTCGAAG AACAACACAG ATGCAAAGCC ATGGTATTGC TCAAAGAGGA 
    GTTATTACTT GCACCATCAT CAGAGGAGTT ATCCCATCAA GAAAAGGAAA 
    TACTTTGACA GTGTTTACGA CTCGAACTCT GATGATTACC GTTTGCAAGG 
    AAAGACTCAT AAAGGAAGCA GAACAATATC TTCCATGAAA AGTCGAAATG 
    CGTCCTTTGT GTCAAGGGAT CATCATGTGA AGCTGCGGAT CAAGTCTTTT 
    AGGGTGCCTG AGCTTTTCGT AGAGATTCCA GAAACTGCTA CTGTTGGCTC 
    CTTGAAGGTG TAATAACAAA ACCTAGTTGT GCTGAAAATC CTGATCAAGA 
    AGAACTTATA TTTGTATTTT TGTAATGTCG GGGTTGTCAG CGGATGGTGA 
    TGGAAGCAGT GACCACCATA CTGGGTGATG GACTTCGAGT CGGGCTGATG 
    GTTCAAGGAA AGAAAGTCCG AGATGATGGC AAAACTCTTC TTCAGACTGG 
    GATCTCTGAG GAGAACAACC ACTTGGATTC TCTTGGTTTC AGCCTTGAAC 
    CTAGCTTAGA GACCACCCCT CAACCACTGT TATCCAGGTT CACTCTTCTC 
    TTCACTCTCA GAGATGCCAC ATCGATAAAA AATCAATCTT TTGCGGCTTA 
    AGGGCCTTGT TTTCTCTCTG CCAGTTATCT GTCAGATCAT GCCTGTGATG 
    ATGTGACGTT ATGCCACGAC AATGCGTTGG ATTCTAGTCA TGAGCCAGAA 
    CCATCCCCAG CTGACTCATT TGGGAAACTA GGCACAAGTG ATCATTCTAG 
    AGCTTTGATT CCTGTTGCCT CAGCAGCAAT GCTGGCTCCT CGGCCTCCTA 
    ACCGTAAGTT TAAAAGGACT GAGCAGCAGC TAGCTGCACA ACGCAGAATT 
    CGTCGACCTT TCTCAGTTAC TGAAGTAGAA GCACTGGTCC AAGCCGTTGA 
    GAAACTCGGA ACCGGAAGGT ACAAAACAAA GAAATAGCAC TTTCTCTTCT 
    TCATGTTGCT GACAAAATGT GTTTGAAAAC TACAGGTGGA GAGATGTGAA 
    GGTTCGTGCT TTCGAGGACG CAGACCATCG TACCTATGTT GATCTCAAGG 
    TTAGTTAGTT TTTTAACTAA CTCTTAACCT TAATATATAC AGTTTGGTAT 
    TGAGTCTTTG CCTTTGTAGG ATAAGTGGAA GACGCTGGTC CACACGGCAA 
    GGATATCTCC ACAACAGCGG AGAGGAGAGC CGGTGCCACA GGAACTTCTG 
    GACCGTGTTT TGAAGGCACA CGCTTACTGG TCACAACACC TAATGCATCA 
    ACTGCAGACT GAGCCACCAT CCACTCAGGT AGAGGCTCTC TAATCTGAAC 
    AGGTTCTTGG TCTAAAGAAC CTTTGTGTAT TATTATGATG ATCCATATTG 
    TAAGATTCTG ACATAGTTGA AGATCTGGTC TCAGTTCTTC TTTGTTTTTT 
    TTTTTTCTTT CTTTCAAATG TAAAGTTTTA TAATTGGAAA TAAGGTTGGG 
    TTTTTTC

    Gene models with high sequence identity

    1. AT3G46590.2 [+] show detail - TRF-like 1
      E-value: 0; Score: 99.71

     

    InterPro Scan Digest

    See the detailed result >

    AT3G46590.2

    Model type
    Protein coding
    Short Description
    TRF-like 1
    Curator Summary
    Encodes a protein that specifically binds plant telomeric DNA (TTTAGGG)n repeats. Involved in bending DNA. Expressed throughout the plant with highest levels in flowers.
    Computational Description
    TRF-like 1 (TRFL1); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Ubiquitin supergroup (InterPro:IPR019955), Homeodomain-related (InterPro:IPR012287), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: telomeric repeat binding protein 1 (TAIR:AT5G59430.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR