F18348

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F18348

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F18348

Determination of introduced cDNA(s)

  • RAFL09-37-J06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-37-J06 - Resource: pda06162

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-37-J06 - full reading
    AGAGACGGTG ATCGGGAAAT GTCGACGAAA GGCGCGGCGG CGGCGTACCC 
    TAGCGCGGCT CGGATATCTG ATTCTCCATG TTATCTTCAG TACTCTGCTT
    CTCTCAAATG TCTTGAAGAA TTTGGATCAG ACAAGAGTAA ATGCCAGGAT
    CATTTTGATG TGTACAAGGA ATGCAAGAAG AAAGAGAGGG AAGCTCGACT
    GGAACGCAAT AAGACACGGT CGTTGTTCTC GTGAATGCAG ATCCTCGAAT
    ACCAATGATG TCTCAGAACA TCACCTAGCT AGTAGTATCC TGTTGTTTCA
    TTTGCAATGG CTGTGTTTGT ATGATCTATC TAAGTAAACA AGTGGAAAGT
    GTTTGTTAAT GTTACTTTTT ACTCCCCATT GGTGAATCAT GGTGTATACC
    TGTTAAACTT TGAGAGCAAG TGGTTATTTA TTTAGTTAGA GAAAAAAAAA
    AAAAAAA

    Gene models with high sequence identity

    1. AT1G02160.1 [+] show detail - Cox19 family protein (CHCH motif)
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT1G02160.1

    Model type
    Protein coding
    Short Description
    Cox19 family protein (CHCH motif)
    Computational Description
    Cox19 family protein (CHCH motif); CONTAINS InterPro DOMAIN/s: CHCH (InterPro:IPR010625); Has 56 Blast hits to 56 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 34; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR