F18349

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F18349

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F18349

Determination of introduced cDNA(s)

  • RAFL06-74-O16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-74-O16 - Resource: pda03533

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-74-O16 - full reading
    TGGCAACTTC ACCACCGGAC CAGTCTCTCT CTATCTCTTC TGTCTCTCTA 
    CCTCGCGCGA CGAATCAATC ATGACTGAAG AACAAGACCT CATCGACCAA
    TCACCACCAC CTTCAGCACC CGACCCTGAA CCAAACTCGA GCACGAATCC
    GAATTCAGTA ATCCATCCAA GGCGTGTGTC TTTCGAGCAC GGACTCCTCC
    CGATCCAGAA ACTCGTTTTC ACCGACCCGA TCCAAACCTT AGCCCCTGTC
    AAGCAGAAGC TAGCCGATGC GGCTTCGAAT AACCGCGTTG GATCGGCTGC
    AATCGCCGAC GTTCTCCAGA TCTCCGGCGA CCATGCGCGT CTCGTTCTCG
    AGACTCTCGG TTCGGTGCTT CATTCCGAGT CTGACCCTCT GGTTCGGGCG
    AAACCTGAGG AAGTTGATTC CGTCGGAGCT GATTTGCGGG ATCTTATTTT
    GTTCCTGTAC ATTCAATCGT ATAAGAAGTT GCTTCCTAGG ACGCATAAGG
    ACTCCGCAGC GGTGGCTGAT GTTTGGCCAT CGACTTCAGC TTTTGATGGA
    TACTTGTCTG CGTTATCGCC AATTCAGCTT GTTCGCAGCA ACAGCCGTCG
    ATTTATGCCA TCACAGGCAG ATGATGAAGC TCATCAGTTG TCATATCTGC
    AAAAACATTT AGCAAACATC ATTTCTCTCC TTGCAGAGCC TGTGGAGGGA
    GAAGGAGATG AATCATTGGT TTTCTCTATG GAGGCGTTCG AGCATCTGCG
    TTTTCTTGTT CAGTTTGGTG ATAAGGGATC TGATGTATCT CCATTGAGCC
    AAGCTACTCC TTTTTTTGCA AATTCTGATC CGGATATGCC CGCTGTTCCA
    GTCCCCGCTT CCCAAGTGCA TGACTGGCTT CTGCAAAACA TAGCTTCCGC
    TTTAGAAAGC ATTACTGAGA GAATTTCTGG AAAAGAGAAC GGACCTTCTA
    ACGATCAAGA TGATGCGATG TCAGATGTTT GTGCTGCTCC GAACAAGGTT
    GCACCTAGTA CTAGAGGCCC GTGTTTAATC GAGGGAGTCT CCAAGACTTC
    ACTTGTTAAG CAAGCCTCCG ATCTAAGGGG TAGATCTGTG AAGGTTGTCA
    ATTGCCATGA TTCTGTAATT TATCTTTTAG CACCATTGCG ATATGCAACT
    GTGCACGGAT GTTCTGATAC TACTATAGTT TTGGGAGCTG TTGGCAAGGC
    AATAAAAGTT GAGCACTGTG AAAGAGTTCA TGTGATTGTA GCTGCCAAAC
    GAGTGTGCAT TGCCAATTGT CGTGAATGTG TATTCTTCTT GGGAGTCAAT
    CAGCGGCCAC TTATTGTTGG TGATAACCAC AAACTGCAGG TCGCTCCATA
    TAATACATTT TACTCTCATT TGGAAGAGCA CATGAGGGAG GTAGGGCTTG
    AGCCAACGAT CAACAAATGG GACAAACCAT TGGCCCTGGG AGCTGTGGAT
    CCACATGACT CCCTGTCACA TCCTGCCGGT GTTGCTGATG CACAGGCTGA
    ATCAGCTGCT TCTGTAGACC CTGACCAGTT CGTAAACTTT TTGATCCCAA
    ACTGGTTTAG CGGCGCGGAG CTTGGTTCGA CGAAAGACAA TCCATTTCCA
    TTGCCAGATG CTTATATGGC AGCTCAGCAG AGAAACCTTA AGAACTTTGA
    AGAAACAAGA CGATCGTTAA AAGAGGCGCC TCTAGAAGAA AACCGGAAAC
    GAGAGCTATC AAGTGCACTC CATGTTTATT TCAAAGACTG GCTTTACGCA
    TCTGGAAATA TAAGGCAACT CTACTGCCTA CAAGGTGACT AATAAGAATA
    ATAGACCAAG CGGAAAGTGT CTTGTTCATG TAGAGCTCCT TCGATCATAT
    TTGGCATATT GCTAGTGAAG AAACCCCACC CCAAGACCAA AAGAAAAAAG
    AAAAAAGAGA AATCAGCCTG ATTCAGTGAT TTGTAGTTTG GAACCAATAC
    TTCACAACGT AACTTATCTG CACAGAAATA CTCTCTTAAA GCTTTCGTTT
    AGATTATTGT TTTCTTGATT TCTGCTTTTC TTTCCTTGAC ATTTCAATCC
    ATCGTTTTTG TTCCCTTCTC

    Gene models with high sequence identity

    1. AT3G57890.1 [+] show detail - Tubulin binding cofactor C domain-containing protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart CARP motif 0.0000059
    HMMSmart CARP motif 0.000023
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPanther UNCHARACTERIZED 0
    ProfileScan C-CAP/cofactor C-like domain 31.728
    HMMPfam Tubulin binding cofactor C 5.3e-34

    See the detailed result >

    AT3G57890.1

    Model type
    Protein coding
    Short Description
    Tubulin binding cofactor C domain-containing protein
    Computational Description
    Tubulin binding cofactor C domain-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: CARP motif (InterPro:IPR006599), C-CAP/cofactor C-like domain (InterPro:IPR017901), Tubulin binding cofactor C (InterPro:IPR012945); BEST Arabidopsis thaliana protein match is: C-CAP/cofactor C-like domain-containing protein (TAIR:AT2G42230.2); Has 385 Blast hits to 385 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 212; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR