F18350

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F18350

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F18350

Determination of introduced cDNA(s)

  • RAFL06-74-O16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-74-O16 - Resource: pda03533

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-74-O16 - full reading 
    TGGCAACTTC ACCACCGGAC CAGTCTCTCT CTATCTCTTC TGTCTCTCTA 
    CCTCGCGCGA CGAATCAATC ATGACTGAAG AACAAGACCT CATCGACCAA 
    TCACCACCAC CTTCAGCACC CGACCCTGAA CCAAACTCGA GCACGAATCC 
    GAATTCAGTA ATCCATCCAA GGCGTGTGTC TTTCGAGCAC GGACTCCTCC 
    CGATCCAGAA ACTCGTTTTC ACCGACCCGA TCCAAACCTT AGCCCCTGTC 
    AAGCAGAAGC TAGCCGATGC GGCTTCGAAT AACCGCGTTG GATCGGCTGC 
    AATCGCCGAC GTTCTCCAGA TCTCCGGCGA CCATGCGCGT CTCGTTCTCG 
    AGACTCTCGG TTCGGTGCTT CATTCCGAGT CTGACCCTCT GGTTCGGGCG 
    AAACCTGAGG AAGTTGATTC CGTCGGAGCT GATTTGCGGG ATCTTATTTT 
    GTTCCTGTAC ATTCAATCGT ATAAGAAGTT GCTTCCTAGG ACGCATAAGG 
    ACTCCGCAGC GGTGGCTGAT GTTTGGCCAT CGACTTCAGC TTTTGATGGA 
    TACTTGTCTG CGTTATCGCC AATTCAGCTT GTTCGCAGCA ACAGCCGTCG 
    ATTTATGCCA TCACAGGCAG ATGATGAAGC TCATCAGTTG TCATATCTGC 
    AAAAACATTT AGCAAACATC ATTTCTCTCC TTGCAGAGCC TGTGGAGGGA 
    GAAGGAGATG AATCATTGGT TTTCTCTATG GAGGCGTTCG AGCATCTGCG 
    TTTTCTTGTT CAGTTTGGTG ATAAGGGATC TGATGTATCT CCATTGAGCC 
    AAGCTACTCC TTTTTTTGCA AATTCTGATC CGGATATGCC CGCTGTTCCA 
    GTCCCCGCTT CCCAAGTGCA TGACTGGCTT CTGCAAAACA TAGCTTCCGC 
    TTTAGAAAGC ATTACTGAGA GAATTTCTGG AAAAGAGAAC GGACCTTCTA 
    ACGATCAAGA TGATGCGATG TCAGATGTTT GTGCTGCTCC GAACAAGGTT 
    GCACCTAGTA CTAGAGGCCC GTGTTTAATC GAGGGAGTCT CCAAGACTTC 
    ACTTGTTAAG CAAGCCTCCG ATCTAAGGGG TAGATCTGTG AAGGTTGTCA 
    ATTGCCATGA TTCTGTAATT TATCTTTTAG CACCATTGCG ATATGCAACT 
    GTGCACGGAT GTTCTGATAC TACTATAGTT TTGGGAGCTG TTGGCAAGGC 
    AATAAAAGTT GAGCACTGTG AAAGAGTTCA TGTGATTGTA GCTGCCAAAC 
    GAGTGTGCAT TGCCAATTGT CGTGAATGTG TATTCTTCTT GGGAGTCAAT 
    CAGCGGCCAC TTATTGTTGG TGATAACCAC AAACTGCAGG TCGCTCCATA 
    TAATACATTT TACTCTCATT TGGAAGAGCA CATGAGGGAG GTAGGGCTTG 
    AGCCAACGAT CAACAAATGG GACAAACCAT TGGCCCTGGG AGCTGTGGAT 
    CCACATGACT CCCTGTCACA TCCTGCCGGT GTTGCTGATG CACAGGCTGA 
    ATCAGCTGCT TCTGTAGACC CTGACCAGTT CGTAAACTTT TTGATCCCAA 
    ACTGGTTTAG CGGCGCGGAG CTTGGTTCGA CGAAAGACAA TCCATTTCCA 
    TTGCCAGATG CTTATATGGC AGCTCAGCAG AGAAACCTTA AGAACTTTGA 
    AGAAACAAGA CGATCGTTAA AAGAGGCGCC TCTAGAAGAA AACCGGAAAC 
    GAGAGCTATC AAGTGCACTC CATGTTTATT TCAAAGACTG GCTTTACGCA 
    TCTGGAAATA TAAGGCAACT CTACTGCCTA CAAGGTGACT AATAAGAATA 
    ATAGACCAAG CGGAAAGTGT CTTGTTCATG TAGAGCTCCT TCGATCATAT 
    TTGGCATATT GCTAGTGAAG AAACCCCACC CCAAGACCAA AAGAAAAAAG 
    AAAAAAGAGA AATCAGCCTG ATTCAGTGAT TTGTAGTTTG GAACCAATAC 
    TTCACAACGT AACTTATCTG CACAGAAATA CTCTCTTAAA GCTTTCGTTT 
    AGATTATTGT TTTCTTGATT TCTGCTTTTC TTTCCTTGAC ATTTCAATCC 
    ATCGTTTTTG TTCCCTTCTC

    Gene models with high sequence identity

    1. AT3G57890.1 [+] show detail - Tubulin binding cofactor C domain-containing protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart CARP motif 5.9e-06
    HMMSmart CARP motif 2.3e-05
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPanther UNCHARACTERIZED 0
    ProfileScan C-CAP/cofactor C-like domain 31.728
    HMMPfam Tubulin binding cofactor C 5.3e-34

    See the detailed result >

    AT3G57890.1

    Model type
    Protein coding
    Short Description
    Tubulin binding cofactor C domain-containing protein
    Computational Description
    Tubulin binding cofactor C domain-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: CARP motif (InterPro:IPR006599), C-CAP/cofactor C-like domain (InterPro:IPR017901), Tubulin binding cofactor C (InterPro:IPR012945); BEST Arabidopsis thaliana protein match is: C-CAP/cofactor C-like domain-containing protein (TAIR:AT2G42230.2); Has 385 Blast hits to 385 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 212; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR