F18351

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased length (PATO:0000574) (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F18351

Determination of introduced cDNA(s)

RAFL09-42-N24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-42-N24 - Resource: pda08364

full reading [+] show sequence

ACACACTCAC AACTCAAATC ATCTTTTTGT CTCCCTCCTG AAAAAATGGG 
GTTTTCGTCT TCATTATCTT GCAGTGCTAT GGGAGCCCTA ATAGTGGGTT 
GCCTTCTGCT TCAAGCATCA AACTCTAATG CTCAGTTGAG ACCTGACTTC 
TACTTCAGGA CTTGCCCACC TATTTTCAAC ATCATTGGGG ATACCATCGT 
CAATGAGCTG CGGACTGATC CTCGTATTGC CGCGAGCCTC CTTCGGCTTC 
ACTTCCATGA CTGCTTTGTT CGTGGTTGTG ATGCATCGAT CTTGCTTGAC 
AATTCCACAT CATTCCGGAC CGAGAAAGAT GCTGCTCCAA ACAAAAATTC 
GGTTCGAGGG TTCGATGTCA TAGATAGAAT GAAAGCAGCC ATTGAGAGAG 
CTTGCCCAAG AACAGTTTCT TGCGCAGATA TTATCACCAT CGCCTCTCAG 
ATATCAGTTC TTTTGTCTGG CGGTCCATGG TGGCCAGTTC CGTTGGGGAG 
AAGAGACAGC GTAGAAGCTT TCTTCGCTCT GGCTAATACA GCTCTTCCCT 
CTCCATTTTC CACTCTTACT CAACTTAAAA CAGCTTTTGC TGACGTTGGC 
CTAAACCGCC CTTCGGATTT AGTCGCCCTC TCCGGTGGTC ACACATTTGG 
AAAAGCACAA TGCCAATTCG TGACACCTCG TCTTTACAAC TTCAACGGTA 
CCAACAGACC AGACCCAAGT TTGAACCCAA CTTACCTCGT TGAACTCCGT 
CGATTGTGTC CTCAAAACGG AAACGGCACC GTTCTGGTTA ACTTCGATTC 
CGTGACTCCA ACTACTTTCG ATAGACAATA TTACACCAAT CTTCTTAATG 
GGAAAGGTTT GATTCAGAGT GACCAAGTGC TTTTCTCAAC TCCAGGAGCT 
GATACGATTC CACTAGTAAA CCAATACAGC AGCAACACGT TCGTGTTCTT 
TGGAGCATTC GTTGATGCAA TGATTAGGAT GGGAAATCTT AAACCTTTGA 
CTGGAACTCA AGGAGAGATA AGACAGAATT GTAGGGTTGT GAATCCAAGA 
ATTAGGGTTG TGGAGAACGA CGATGGTGTT GTGAGTTCTA TCTGATTATG 
CATGTTGGGG ATATATGGAT ATGTAAGAAC GTATAAAATG TGTGGGATTG 
TGGGAACATT TCGACTAAAT AAAGTTCTCA CAAGTTGTGT GATTTATGAA 
ATTTGGTCTT AATTAACACT T

Gene models with high sequence identity

AT2G38390.1 [+] show detail - Peroxidase superfamily protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
ProfileScan	Haem peroxidase, plant/fungal/bacterial	80.629
superfamily	Haem peroxidase	2.4e-115
FPrintScan	Plant peroxidase	8.2e-68
FPrintScan	Plant peroxidase	8.2e-68
FPrintScan	Plant peroxidase	8.2e-68
FPrintScan	Plant peroxidase	8.2e-68
FPrintScan	Plant peroxidase	8.2e-68
FPrintScan	Plant peroxidase	8.2e-68
FPrintScan	Plant peroxidase	8.2e-68
FPrintScan	Plant peroxidase	8.2e-68
FPrintScan	Plant peroxidase	8.2e-68
FPrintScan	Haem peroxidase, plant/fungal/bacterial	1.3e-33
FPrintScan	Haem peroxidase, plant/fungal/bacterial	1.3e-33
FPrintScan	Haem peroxidase, plant/fungal/bacterial	1.3e-33
FPrintScan	Haem peroxidase, plant/fungal/bacterial	1.3e-33
FPrintScan	Haem peroxidase, plant/fungal/bacterial	1.3e-33
PatternScan	Peroxidases heam-ligand binding site	0
PatternScan	Peroxidase, active site	0
Gene3D	no description	1.4e-59
HMMPfam	Haem peroxidase, plant/fungal/bacterial	2.4e-71

See the detailed result >

AT2G38390.1

Model type: Protein coding
Short Description: Peroxidase superfamily protein
Computational Description: Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to salt stress; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT2G38380.1); Has 4338 Blast hits to 4309 proteins in 248 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 52; Plants - 4237; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).
Link: InterPro Scan - TAIR