F18430

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F18430

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F18430

Determination of introduced cDNA(s)

  • RAFL09-50-G22 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-50-G22 - Resource: pda06450

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-50-G22 - full reading 
    AGGAAAGACT AAACACTTCG AGAAAAGAAC CAACCCGGAG TGGAATCAAG 
    TTTTCGCATT TTCAAAAGAC AAGGTCCAAT CCTCTACTGT TGAAGTCTTT 
    GTGCGCGATA AGGAGATGGT TACAAGAGAT GAATACATCG GGAAGGTTGT 
    GTTTGATATG CGTGAGGTTC CTACAAGAGT TCCTCCTGAT AGTCCACTTG 
    CACCTCAGTG GTACAGATTA GAAGATCGGC GAGGTGAGAG TAAGAAAAGA 
    GGAGAGGTTA TGGTAGCGGT TTGGCTTGGG ACGCAAGCCG ATGAAGCATT 
    TCCTGATGCT TGGCATTCGG ATGCTTCCTC TGTTCAAGGA GAAGGTGTCC 
    AAAGCGTGAG GTCTAAAGTC TATGTATCTC CCAAATTGTG GTATCTGCGG 
    GTTAATGTCA TCGAGGCGCA AGATGTTGAG CCTAGTGACA GGAGCCAACC 
    ACCTCAAGCT TTCGTTAAAG TACAAGTTGG GAATCAGATT CTGAAAACAA 
    AGTTATGTCC TAACAAGACG ACGAATCCGA TGTGGAACGA AGATCTTGTT 
    TTTGTAGCTG CAGAGCCATT TGAAGAACAG TTCTTCTTGA CGGTCGAAAA 
    CAAGGTGACA CCAGCTAAAG ATGAAGTCAT GGGGAGGCTG ATCTCACCTT 
    TGAGCGTATT TGAGAAAAGG TTAGATCACA GAGCTGTTCA TTCCAAATGG 
    TACAACCTCG AAAAGTTTGG GTTTGGGGCT CTGGAAGGAG ACAAGAGACA 
    CGAGCTCAAG TTCTCCAGCC GAATCCACCT ACGAGTTTGC CTTGAAGGAG 
    GTTACCATGT AATGGACGAG TCAACTCTGT ACATCAGTGA CGTGAAACCT 
    ACGGCAAGGC AACTATGGAA GTCTCCTATT GGCATCCTTG AAGTAGGAAT 
    CTTGAGTGCT CAAGGGCTAT CGCCTATGAA AACAAAAGAC GGTAAAGCGA 
    CAACAGATCC GTATTGTGTT GCCAAGTACG GTCAAAAATG GGTGAGAACA 
    AGAACCATCA TTGACAGCTC TAGCCCTAAA TGGAATGAGC AATACACATG 
    GGAAGTGTAT GATCCTTGTA CAGTTATCAC ACTGGGAGTT TTCGATAACT 
    GTCACCTTGG CGGAAGTGAG AAATCGAACA GTGGAGCCAA AGTGGATTCG 
    AGAATCGGGA AGGTAAGGAT CCGGTTGTCG ACTCTAGAGG CTGATAGAAT 
    CTACACTCAC TCCTACCCTC TTCTTGTTCT GCAAACAAAA GGGTTAAAGA 
    AAATGGGAGA AGTCCAATTA GCTGTGAGAT TCACTTGTCT ATCCTTGGCT 
    CACATGATCT ATCTTTATGG CCATCCTCTG CTTCCAAAGA TGCATTATCT 
    CCATCCATTC ACTGTGAACC AATTAGACAG TCTAAGATAC CAAGCAATGA 
    GCATTGTCGC AGCACGGTTA TCTCGAGCAG AGCCTCCTTT AAGGAAAGAG 
    AACGTAGAGT ACATGCTTGA TGTTGATTCA CACATGTGGA GCATGAGAAG 
    GAGCAAAGCT AACTTCTTCA GGATAGTGTC TGTGTTTGCA GGCTTGATTG 
    CTATGAGTAA ATGGCTCGGA GACGTCTGCT ACTGGAAGAA TCCGTTGACG 
    ACGATATTAT TCCACGTTCT CTTCTTTATA TTGATTTGTT ATCCGGAGCT 
    GATACTCCCA ACCACATTCC TCTACATGTT CTTGATAGGG CTTTGGAATT 
    TCCGGTTCAG GCCGCGTCAT CCTGCTCATA TGGACACAAA GGTATCTTGG 
    GCTGAAGCGG CTAGCCCTGA TGAGCTAGAT GAGGAATTTG ATACTTTCCC 
    AACTTCAAAG GGACAAGATG TTGTGAAGAT GAGGTATGAT AGGTTAAGAA 
    GCGTTGCGGG TCGGATCCAG ATGGTTGTTG GAGACATTGC AACGCAAGGA 
    GAGAGGTTTC AGGCTTTGTT GAGTTGGAGA GATCCGCGTG CGACTTGCTT 
    GTTTGTGATT TTTTGTCTTG TTGCTGCGAT GATTTTGTAC GTGACGCCTT 
    TCAAGATCAT AGCTCTTGCG GGTGGGATGT TCTGGATGAG GCATCCTAAG 
    TTCAGAAGCA AGATGCCTTC TGCTCCAAGT AACTTCTTCA GGAAATTACC 
    TTCAAAAGCA GATTGTATGC TTTGAATTGT AAAACTTCTT TGTGGCTTTT 
    AGGTCTTCTC TGCTCGTAAC TTGTGTTTCT TGTGTTCGTG TGTTTATCTG 
    CTCTGTTTTA TTATTTTGTT CTGTTTGCTT CTATTCTTAT CATGTACTGT 
    GTTGTTGGGT TTACTCTAAA ACCCAAAAGT AGTGGGCTTT AGTTATAATG 
    TTTTGTTTGT ACGTTTTTTC CTTCTCTTAA AAAGAAATAA AATTCAATAG

    Gene models with high sequence identity

    1. AT5G06850.1 [+] show detail - C2 calcium/lipid-binding plant phosphoribosyltransferase family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SYNAPTOTAGMIN 2.3e-13
    Gene3D no description 6.4e-08
    Gene3D no description 4.9e-14
    Gene3D no description 3.8e-18
    HMMSmart C2 calcium-dependent membrane targeting 20
    HMMSmart C2 calcium-dependent membrane targeting 6.3e-08
    HMMSmart C2 calcium-dependent membrane targeting 2.1e-15
    ProfileScan C2 membrane targeting protein 9.805
    ProfileScan C2 membrane targeting protein 11.3
    ProfileScan C2 membrane targeting protein 10.826
    HMMPfam Phosphoribosyltransferase C-terminal, plant 2.2e-80
    HMMPfam C2 calcium-dependent membrane targeting 3.2e-06
    HMMPfam C2 calcium-dependent membrane targeting 7.9e-13
    HMMPfam C2 calcium-dependent membrane targeting 7.8e-17
    superfamily C2 calcium/lipid-binding domain, CaLB 1.1e-24
    superfamily C2 calcium/lipid-binding domain, CaLB 4.2e-23
    superfamily C2 calcium/lipid-binding domain, CaLB 2.7e-16

    See the detailed result >

    AT5G06850.1

    Model type
    Protein coding
    Short Description
    C2 calcium/lipid-binding plant phosphoribosyltransferase family protein
    Computational Description
    C2 calcium/lipid-binding plant phosphoribosyltransferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: tryptophan biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phosphoribosyltransferase C-terminal (InterPro:IPR013583), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (TAIR:AT5G48060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR