F18508

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F18508

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F18508

Determination of introduced cDNA(s)

RAFL06-10-F05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-10-F05 - Resource: pda17173

full reading [+] show sequence

TGAAAAACCA AAACTCTTAT CTTCGGTACA GAGCAAATCA CAGCTCCCGA 
TGGCCGCCAC GTCATCATCA CCGCCGTGTA ACATCTCCGC GTCCTCCCTC 
CTCCTCCGTC AACCTTCTCG CTCAATCCTT AAAGTGTTCG GTTTATTACC 
ACCTGTAAGT AGGAATAACC GTAAACTCGG CCGGTTAACG GTGACCCGGT 
CTAATCTGGC GCAGGATTTT CTTGGTGACT TCGGAGCTCG TGACCCTTAC 
CCGGAGGAGA TAGCGAGTCA ATTCGGAGAT AAAGTGTTGG GATGCCAAAG 
CACTGAGCAC AAGATTTTGA TACCAAACGC ATCTGTTTTG TCTCTCTCCC 
AGCTTCAGTG TTCCCCTGTT TCGTCTTCAC AGCCTCCTTT GTCCGGCGAT 
GATGCCAGAA CTCTCCTCCA CAAGGTTTTG GGATGGAGTA TAGTGGATAA 
TGAAGCGGGT GGTCTGAAAA TAAGGTGTAT GTGGAAAGTG AGGGATTTTG 
GGTGCGGTGT TGAACTCATA AACAGGATCC ATAAGGTTGC TGAAGCTTCT 
GGTCATTACC CTTCTCTTCA CTTGGAAAGT CCTACCCAAG TTCGAGCTGA 
ACTATTTACC TCTTCTATCG GAGGGTTGAG CATGAATGAT TTCATAATGG 
CGGCTAAAAT AGATGATATC AAGACTTCTG ATCTTTCCCC TAGGAAAAGA 
GCTTGGGCGT GATCTTCTTT TCATTATTTT GGAACATTTT TGTTTGATAG 
TATGTAATGT ATGTGATGTA TTCTAAATTG TGTGTGATCG GTCTACATGT 
CGAGTTATAT AGAAAGCATT GTCATAACCG CATAAGAGAT ATCACGCAAC 
ATGTCTTTGA GATTCATTCA TCAATCAAAA GAAGAAAGAA CACCAAAAAA 
AAAA

Gene models with high sequence identity

AT5G51110.1 [+] show detail - Transcriptional coactivator/pterin dehydratase
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
superfamily	Transcriptional coactivator/pterin dehydratase	6.7e-20
HMMPanther	Transcriptional coactivator/pterin dehydratase	8.2e-60
Gene3D	Transcriptional coactivator/pterin dehydratase	5.7e-13
HMMPfam	Transcriptional coactivator/pterin dehydratase	8.5e-21

See the detailed result >

AT5G51110.1

Model type: Protein coding
Short Description: Transcriptional coactivator/pterin dehydratase
Computational Description: Transcriptional coactivator/pterin dehydratase; FUNCTIONS IN: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; INVOLVED IN: tetrahydrobiopterin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional coactivator/pterin dehydratase (InterPro:IPR001533); BEST Arabidopsis thaliana protein match is: Transcriptional coactivator/pterin dehydratase (TAIR:AT1G29810.1); Has 1849 Blast hits to 1849 proteins in 364 species: Archae - 43; Bacteria - 697; Metazoa - 0; Fungi - 2; Plants - 93; Viruses - 0; Other Eukaryotes - 1014 (source: NCBI BLink).
Link: InterPro Scan - TAIR