F18622

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F18622

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F18622

Determination of introduced cDNA(s)

  • RAFL09-67-H06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-67-H06 - Resource: pda08668

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-67-H06 - full reading 
    AACCCAATAA TACCCAATAC ATAACATTTT CGGTGGAATC TTCTTTTCTC 
    CACACACACC AAAGAAAAAA AAAACATCCA AAGGTTTGCA AATAAGGAAA 
    AAGATGGGGT TAAATTTCAG GGAAAAGGCA TGGATACTTC TGGGGATTCT 
    TTGTTGTTCA TCTTTGATTT GTTCAGTTAA AGCAATTGTC ACTTACGATC 
    GTAAAGCTGT GATCATCAAT GGTCAGAGAA GGATCCTTCT CTCTGGCTCC 
    ATTCACTACC CAAGAAGCAC ACCTGAGATG TGGCCTGACC TTATACAAAA 
    AGCCAAAGAT GGAGGGTTGG ATGTTATACA GACTTATGTT TTCTGGAATG 
    GGCATGAACC TTCTCCTGGA CAATATTATT TTGAGGACAG ATATGATCTA 
    GTTAAGTTCA TCAAGGTGGT ACAACAAGCT GGTCTTTACG TTCATCTCAG 
    GATTGGTCCC TATGTTTGCG CTGAATGGAA CTTTGGAGGG TTTCCTGTGT 
    GGCTCAAATA TGTTCCCGGT ATGGTATTTA GGACCGACAA TGAACCTTTC 
    AAGGCTGCAA TGCAAAAATT CACTGAGAAG ATTGTGAGGA TGATGAAAGA 
    AGAAAAATTA TTTGAGACTC AAGGAGGACC CATCATTCTG TCACAGATAG 
    AGAATGAGTA TGGACCAATA GAGTGGGAGA TAGGAGCACC AGGGAAGGCA 
    TACACAAAAT GGGTAGCTGA AATGGCACAA GGACTCTCCA CTGGTGTCCC 
    ATGGATTATG TGCAAGCAAG ATGATGCTCC TAACTCTATT ATAAACACAT 
    GTAATGGGTT TTATTGTGAG AATTTCAAAC CAAACTCGGA CAATAAGCCG 
    AAAATGTGGA CAGAGAACTG GACTGGTTGG TTTACAGAGT TTGGAGGTGC 
    AGTACCATAC AGGCCAGCCG AAGACATTGC CTTATCCGTG GCTCGCTTCA 
    TACAGAACGG TGGCTCTTTC ATCAACTATT ATATGTACCA TGGAGGAACC 
    AACTTCGACA GAACAGCCGG TGAATTCATC GCCACCAGCT ATGACTATGA 
    TGCTCCTCTT GATGAATACG GGTTACCGAG AGAACCTAAG TATAGTCACT 
    TGAAAAGGCT GCATAAGGTC ATCAAGCTCT GCGAACCGGC ATTGGTCTCT 
    GCTGATCCTA CAGTCACATC ACTCGGGGAT AAACAAGAAG CTCACGTGTT 
    CAAGTCTAAG TCATCTTGCG CTGCTTTTCT CTCAAACTAC AACACAAGTT 
    CTGCTGCAAG AGTCTTGTTT GGCGGATCTA CATATGATCT GCCTCCTTGG 
    TCTGTCAGTA TTCTACCCGA CTGCAAAACT GAGTATTACA ACACTGCCAA 
    GGTCCGTACA TCAAGCATAC ACATGAAGAT GGTTCCTACA AACACACCAT 
    TCTCTTGGGG TTCATACAAC GAAGAGATTC CTTCTGCAAA TGACAATGGT 
    ACCTTTTCAC AAGATGGGCT TGTGGAACAG ATAAGTATCA CCAGAGACAA 
    GACAGACTAT TTCTGGTATC TGACAGATAT TACAATCAGT CCTGATGAAA 
    AGTTCCTAAC TGGTGAAGAC CCTCTTCTTA CTATTGGGTC AGCTGGGCAT 
    GCTCTTCATG TATTCGTTAA TGGCCAGCTT GCAGGAACTG CATATGGATC 
    ACTGGAGAAG CCAAAGCTAA CATTTAGTCA GAAGATCAAA TTACATGCAG 
    GGGTCAACAA ACTTGCTCTA TTGAGTACTG CAGCGGGTCT GCCGAACGTT 
    GGCGTGCATT ATGAGACTTG GAATACTGGA GTTCTTGGCC CAGTGACACT 
    GAATGGAGTT AACTCCGGAA CATGGGACAT GACTAAATGG AAATGGTCTT 
    ACAAGATTGG TACTAAGGGT GAAGCTCTGA GCGTTCATAC CTTAGCCGGG 
    AGTTCAACGG TAGAATGGAA AGAAGGATCA TTAGTGGCTA AAAAGCAGCC 
    CTTGACCTGG TACAAGGTAA GAGAAACAGA GGAATCAATG AATCATGACC 
    ACCAACAAAG TTAGATCAAT ATAATGAAAA CCGAAATCCA CAGGGCAGAA 
    TTTTCACCAT CTCTTTTTGC AGTCTACTTT TGACTCACCA ACAGGCAATG 
    AACCATTGGC TTTAGACATG AACACAATGG GGAAAGGTCA AATGTGGATA 
    AATGGGCAGA ACATCGGACG CCACTGGCCA GCATATACAG CTCGTGGGAA 
    ATGCGAACGC TGCAGCTATG CCGGGACTTT CACAGAGAAG AAATGTTTGA 
    GTAACTGTGG AGAAGCTTCA CAAAGATGGT ACCATGTGCC TCGTTCATGG 
    CTGAAGCCAA CTAATAACCT TGTCATTGTA CTTGAAGAAT GGGGTGGTGA 
    ACCCAATGGG ATCTCTCTTG TAAAAAGAAC AGCCAAATAA TAGCTTTCTG 
    ACTCCATTTT TTTCAGGATA AAATCTGTTT CTTTGTGACA AATTTAAGGC 
    TCTCTGCAAG TCATTGATAG AATACAGATA TAAATGTACA TATAAACTGG 
    GAATTATTGG CTCATATAGA TGAAAATTAT CTCAT

    Gene models with high sequence identity

    1. AT4G26140.2 [+] show detail - beta-galactosidase 12
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Glycoside hydrolase, subgroup, catalytic core 1.6e-129
    PatternScan Glycoside hydrolase, family 35, conserved site 0
    FPrintScan Glycoside hydrolase, family 35 3.6e-70
    FPrintScan Glycoside hydrolase, family 35 3.6e-70
    FPrintScan Glycoside hydrolase, family 35 3.6e-70
    FPrintScan Glycoside hydrolase, family 35 3.6e-70
    FPrintScan Glycoside hydrolase, family 35 3.6e-70
    FPrintScan Glycoside hydrolase, family 35 3.6e-70
    FPrintScan Glycoside hydrolase, family 35 3.6e-70
    FPrintScan Glycoside hydrolase, family 35 3.6e-70
    FPrintScan Glycoside hydrolase, family 35 1.5e-05
    FPrintScan Glycoside hydrolase, family 35 1.5e-05
    HMMPanther BETA-GALACTOSIDASE 2.1e-299
    HMMPanther Glycoside hydrolase, family 35 2.1e-299
    HMMPanther BETA-GALACTOSIDASE 6.1e-46
    HMMPanther Glycoside hydrolase, family 35 6.1e-46
    superfamily Glycoside hydrolase, catalytic core 4e-86
    superfamily Galactose-binding domain-like 4.5e-34
    superfamily Galactose-binding domain-like 3.4e-11
    HMMPfam Glycoside hydrolase, family 35 4.5e-118
    HMMPfam Glycoside hydrolase family 2, carbohydrate-binding 2.4e-05

    See the detailed result >

    AT4G26140.2

    Model type
    Protein coding
    Short Description
    beta-galactosidase 12
    Curator Summary
    putative beta-galactosidase
    Computational Description
    beta-galactosidase 12 (BGAL12); FUNCTIONS IN: cation binding, beta-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35, conserved site (InterPro:IPR019801), Glycoside hydrolase family 2, carbohydrate-binding (InterPro:IPR006104), Glycoside hydrolase, family 35 (InterPro:IPR001944), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: beta-galactosidase 2 (TAIR:AT3G52840.1); Has 2056 Blast hits to 2037 proteins in 472 species: Archae - 15; Bacteria - 846; Metazoa - 355; Fungi - 209; Plants - 564; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR