F18633

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F18633

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
  • abnormal (PATO:0000460)
    (Stem::Others)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F18633

Determination of introduced cDNA(s)

  • RAFL05-15-D21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-15-D21 - Resource: pda02633

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-15-D21 - full reading 
    AATTTCTTCG CTCCCTTTCT TCTTCTTCTC TCCTTCTTTG AATTTTGATT 
    TTGGTTGAAT GGAGATATCA GAGAGAGTTC GAGCTCGATT AGCTGTTCTC 
    TCAGGTCATT TATCGGAAGG AAAACAGGAT TCTCCAGCGA TCGAGCGATG 
    GTGCACGTCG GCGGATACGA GTGTCGCACC GCTTGGATCT TTGAAGGGAA 
    CACTGACGAT CGTCGACGAA CGCACCGGAA AAAATTATAA AGTTCCGGTC 
    TCAGATGATG GTACCGTTAA AGCCGTTGAT TTCAAAAAGA TAGTGACGGG 
    GAAGGAAGAC AAGGGGCTTA AGTTATACGA TCCAGGTTAC TTGAACACGG 
    CTCCTGTTCG ATCTTCGATT TCTTACATCG ATGGAGATGA AGGGATCCTT 
    CGTTACCGTG GCTACCCAAT TGAGGAAATG GCTGAGAACA GTACTTTTCT 
    GGAGGTGGCT TATCTTCTCA TGTATGGGAA TCTGCCCTCT GAAAGTCAGC 
    TATCTGATTG GGAGTTTGCA GTTTCTCAGC ATTCAGCTGT GCCACAAGGT 
    GTATTAGATA TTATACAGTC TATGCCTCAT GATGCACACC CAATGGGAGT 
    TCTTGTGAGT GCAATGAGTG CGCTTTCCAT CTTTCATCCT GATGCTAATC 
    CTGCTCTTAG GGGCCAGGAT ATTTACGATT CAAAACAAGT TAGAGATAAA 
    CAAATTATCC GCATTATTGG AAAGGCACCA ACAATTGCAG CAGCTGCTTA 
    TCTGAGGATG GCAGGAAGGC CTCCTGTTCT TCCTTCAGGA AACCTTCCTT 
    ATGCAGATAA TTTCCTCTAT ATGCTTGATT CCCTGGGAAA TAGATCCTAC 
    AAACCTAATC CTCGGCTGGC TCGGGTGTTG GACATCCTCT TCATACTGCA 
    TGCAGAGCAT GAAATGAACT GCTCCACCGC TGCTGCTCGG CATCTTGCCT 
    CTAGCGGTGT TGATGTCTAC ACTGCTGTTG CTGGAGCTGT GGGAGCGCTT 
    TATGGTCCAC TTCATGGTGG TGCAAACGAG GCTGTGCTTA AGATGTTGTC 
    AGAGATTGGG ACTGTTGAAA ATATTCCAGA GTTCATTGAG GGTGTGAAGA 
    ACAGGAAGAG GAAGATGTCT GGTTTTGGAC ACCGTGTGTA CAAAAACTAT 
    GACCCTCGAG CTAAAGTCAT CAAGAACCTG GCTGATGAAG TATTTTCCAT 
    TGTTGGAAAG GATCCTCTAA TTGAGGTTGC TGTTGCACTT GAGAAGGCAG 
    CTCTCTCTGA CGATTACTTT GTTAAGAGAA AGCTGTATCC AAATGTTGAC 
    TTCTACTCTG GATTAATATA CAGGGCAATG GGATTTCCAC CGGAGTTCTT 
    CACGGTCTTA TTCGCGATTC CTCGCATGGC TGGATACTTG TCACATTGGA 
    AAGAGTCACT GGATGATCCT GACACCAAGA TCATGAGACC ACAACAGGTG 
    TACACAGGCG TGTGGCTGAG GCATTACACA CCAGTGAGAG AGAGAATAGT 
    GACGGATGAC TCGAAAGAGT CAGACAAATT GGGTCAAGTC GCGACTTCAA 
    ATGCATCAAG AAGACGTTTG GCTGGATCTT CAGTTTAGAC GTAGGCCCTT 
    TTAGGGTCCA TACTATACAT CAAACCACAC CGCAAAGAAT AAAAGAGATT 
    GGTTTCTCTA GCCTAAAGCT AAGATACTTG ATCATACTCG AAACTTAGAT 
    TTCTCATTTT GTAGGCACAA TATAGACTTG ATCTATATTT GCTTCAATCC 
    ATCTTCTAAG GGTGTTTGTC CGCCTTGTTT GTCTTCTTAT CAGAACGTGT 
    TTATTGTATA AAATGATTTA TGG

    Gene models with high sequence identity

    1. AT2G42790.1 [+] show detail - citrate synthase 3
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Citrate synthase-like, large alpha subdomain 2.2e-92
    HMMPfam Citrate synthase-like 1.2e-128
    HMMTigr Citrate synthase, type II 3e-157
    HMMPanther Citrate synthase-like 5.4e-191
    superfamily Citrate synthase-like, core 4.6e-143
    FPrintScan Citrate synthase-like 1.4e-46
    FPrintScan Citrate synthase-like 1.4e-46
    FPrintScan Citrate synthase-like 1.4e-46
    FPrintScan Citrate synthase-like 1.4e-46
    FPrintScan Citrate synthase-like 1.4e-46
    FPrintScan Citrate synthase-like 1.4e-46
    PatternScan Citrate synthase active site 0

    See the detailed result >

    AT2G42790.1

    Model type
    Protein coding
    Short Description
    citrate synthase 3
    Curator Summary
    Encodes a peroxisomal citrate synthase that is expressed throughout seedling and shoot development.
    Computational Description
    citrate synthase 3 (CSY3); FUNCTIONS IN: citrate (SI)-synthase activity; INVOLVED IN: fatty acid beta-oxidation, tricarboxylic acid cycle; LOCATED IN: peroxisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Citrate synthase-like, large alpha subdomain (InterPro:IPR016142), Citrate synthase, type II (InterPro:IPR010953), Citrate synthase-like (InterPro:IPR002020), Citrate synthase-like, core (InterPro:IPR016141), Citrate synthase active site (InterPro:IPR019810); BEST Arabidopsis thaliana protein match is: citrate synthase 2 (TAIR:AT3G58750.1); Has 13520 Blast hits to 13518 proteins in 3201 species: Archae - 174; Bacteria - 8544; Metazoa - 357; Fungi - 325; Plants - 176; Viruses - 0; Other Eukaryotes - 3944 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR