F18702

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F18702

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F18702

Determination of introduced cDNA(s)

  • RAFL07-16-B18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL07-16-B18 - Resource: pda04333

    full reading [+] show sequence

    Nucleotide sequence: RAFL07-16-B18 - full reading 
    GAATTAGGCC ACCAAAAAAC TCTTGGATAA AAAAAAAACT GAGAAACAGA 
    AAAAAGAAAA AACAAAACAC ACATTCTCGA TTTGTCTGTG CCACACACAC 
    TCTCTTGCAC ATTCTTGTCT CGACAATACT CTCAGAATAC GATCTTGAAG 
    AGCAAAGATT GTTCCTTTAT TGATGAATTG AGTGCAAAAG AGTGTTATAT 
    AATGGCTACT GCAGCTGTTA TAGGACTCAA CACTGGCAAA AGATTGTTGA 
    GTTCATCGTT TTATCACTCA GATGTTACAG AGAAGTTTCT ATCTGTAAAT 
    GATCATTGTT CATCACAGTA TCATATTGCT TCAACGAAAA GCGGGATAAC 
    TGCGAAAAAG GCGTCGAACT ATAGTCCGAG TTTTCCTTCG TCGAATCGTC 
    ACACACAATC TGCTAAAGCT TTGAAAGAGA GTGTAGATGT TGCTTCTACT 
    GAGAAGCCAT GGCTACCTAA TGGAACTGAT AAGGAATTGG AAGAAGAATG 
    TTATGATGAT GATGATCTAA TTAGTCATTC TGTTGAGGCA ATTTTACTGT 
    TACAGAAGTC TATGTTAGAG AAAAGTTGGA ATCTTTCATT TGAAAAGGCG 
    GTGTCGAGTG AGTATCCGGG CAAGGGGACT ATACGGAAGA AGAAGATTCC 
    GGTTATCACC TGTTCAGGGA TTTCAGCTCG TCAAAGAAGG ATTGGTGCTA 
    AGAAGAAAAC TAATATGACT CATGTTAAAG CAGTTTCTGA TGTTTCTAGT 
    GGAAAGCAAG TTAGAGGTTA TGTGAAAGGT GTAATAAGTG AAGATGTGCT 
    TAGTCATGTG GAAGTTGTGC GCTTGTCTAA GAAAATCAAA TCTGGTCTTC 
    GTCTTGATGA TCATAAGTCA AGATTGAAGG ATAGATTAGG CTGTGAGCCT 
    TCTGATGAAC AGCTTGCAGT ATCTTTGAAG ATATCTCGGG CCGAGCTTCA 
    GGCGTGGTTG ATGGAGTGTC ATCTAGCTAG AGAGAAGTTG GCTATGAGTA 
    ATGTGCGTTT GGTTATGTCT ATTGCTCAGC GTTATGATAA TTTGGGAGCA 
    GAAATGTCTG ACCTTGTTCA GGGTGGTCTT ATCGGACTTT TGCGGGGAAT 
    AGAGAAATTT GATTCTTCCA AAGGTTTCAG AATTTCAACT TATGTATATT 
    GGTGGATTCG ACAGGGTGTC TCAAGAGCAC TAGTGGACAA CTCAAGAACC 
    TTGAGGTTAC CTACTCACCT ACATGAAAGA CTCGGTTTAA TCCGAAATGC 
    AAAGCTTAGA CTTCAAGAGA AAGGAATCAC ACCCTCCATT GATAGGATTG 
    CAGAGTCTCT AAACATGTCG CAGAAGAAAG TTAGAAATGC AACAGAGGCT 
    GTAAGCAAAG TATTTTCTCT AGACAGAGAT GCATTTCCTT CTTTGAATGG 
    TCTCCCTGGA GAAACTCATC ACAGTTACAT TGCGGATACT CGTTTGGAGA 
    ACAATCCGTG GCACGGGTAT GATGATTTGG CACTCAAGGA GGAAGTAAGC 
    AAGCTTATAA GTGCAACACT CGGAGAACGG GAAAAAGAGA TCATTCGATT 
    ATACTATGGT CTAGACAAAG AATGTCTCAC ATGGGAAGAC ATTAGTAAAC 
    GGATAGGATT ATCGAGAGAG AGGGTGAGAC AGGTAGGGCT TGTGGCACTG 
    GAGAAACTAA AACACGCAGC GAGGAAGAGA AAAATGGAGG CAATGATCCT 
    TAAGAATTGA TTTTGTTTTT GTACATTTTG ATTACATCAG AGCCATAGAG 
    AGCGGTTGTG AATGTGTATA TATACAGGAC AAAAAAGGGG GAAGAGTACT 
    ACTCTCTTTT ATTTTTTTAT CTTCCTTGCT TCTTTCGTAA ACTGAGTTGA 
    GAAACAAGAG ACAGTTATGT AATATGGCTT CACGTAAACT TCATCATTCC 
    TCATATATTA TCAAC

    Gene models with high sequence identity

    1. AT1G64860.1 [+] show detail - sigma factor A
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan RNA polymerase sigma-70 factor 3.7e-18
    FPrintScan RNA polymerase sigma-70 factor 3.7e-18
    FPrintScan RNA polymerase sigma-70 factor 3.7e-18
    FPrintScan RNA polymerase sigma-70 factor 3.7e-18
    FPrintScan RNA polymerase sigma-70 factor 3.7e-18
    superfamily RNA polymerase sigma factor, region 2 8.7e-42
    superfamily RNA polymerase sigma factor, region 3/4 1.9e-13
    superfamily RNA polymerase sigma factor, region 3/4 1.1e-08
    Gene3D no description 2.7e-32
    Gene3D Winged helix-turn-helix transcription repressor DNA-binding 4e-12
    HMMTigr RNA polymerase sigma-70 1.2e-16
    HMMPfam RNA polymerase sigma-70 region 3 2.4e-12
    HMMPfam RNA polymerase sigma-70 region 2 7.6e-17
    HMMPfam RNA polymerase sigma-70 region 4 6.6e-11
    PatternScan RNA polymerase sigma-70 factor 0

    See the detailed result >

    AT1G64860.1

    Model type
    Protein coding
    Short Description
    sigma factor A
    Curator Summary
    Subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzyme
    Computational Description
    sigma factor A (SIGA); CONTAINS InterPro DOMAIN/s: RNA polymerase sigma factor, region 2 (InterPro:IPR013325), Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA polymerase sigma-70 region 3 (InterPro:IPR007624), RNA polymerase sigma-70 (InterPro:IPR014284), RNA polymerase sigma factor, region 3/4 (InterPro:IPR013324), RNA polymerase sigma-70 factor (InterPro:IPR000943), RNA polymerase sigma-70 region 2 (InterPro:IPR007627), RNA polymerase sigma-70 region 4 (InterPro:IPR007630); BEST Arabidopsis thaliana protein match is: RNApolymerase sigma subunit 2 (TAIR:AT1G08540.1); Has 23164 Blast hits to 23156 proteins in 2779 species: Archae - 0; Bacteria - 16620; Metazoa - 0; Fungi - 0; Plants - 234; Viruses - 18; Other Eukaryotes - 6292 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR