F18726

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F18726

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F18726

Determination of introduced cDNA(s)

  • RAFL06-67-H11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-67-H11 - Resource: pda03270

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-67-H11 - full reading
    AAAGAAATAA AGTAATGAAG AAAACTAGAA ATGTTGCTTC TTCTCCTATT 
    GAATGTGTCC ACCTCCAGAC CAAACCCACC ACCACTCTTG TTCGGTCTTT
    CTTCTTCTTC CTCTTCAACT CTCAAACAAT CTCTTCCTTT ATCATCTTCT
    ATCTCTTCCT CTGTTCCTTC TTCTGGTTTT GCCAATCACC AAACCTGACT
    AACCCTTCTC CTCCTCCTCT CTCCGTCGCT CCCCTTCGCG GGGATGCCAA
    TTCTCCACCG CCGGAATCTT CTTCTTCTCC GGCGACGAAA TCTTCTTTAA
    TGATTTCTTC TAGAGATCCC AATGCCCTCT TTAGCGGCGG TGGAATCAGC
    TTTTTAGCAG GAGTTAGAAC TGTGAAGTTT AGTTATGGTT ATTCTAGTCT
    TAAAGGTAAA AGAGCAACAA TGGAGGATTA CTTCGAAACT AGAATCTCTG
    ATGTTAATGG ACAAATGGTT GCTTTCTTTG GTGTCTTTGA TGGTCATGGT
    GGAGCAAGAA CTGCAGAATA TCTTAAAAAC AATCTTTTCA AGAATTTAGT
    TAGTCATGAT GATTTTATCT CAGACACTAA GAAAGCTATT GTTGAAGTTT
    TTAAGCAGAC AGATGAAGAG TATCTTATTG AAGAGGCAGG ACAACCGAAG
    AATGCTGGCT CGACTGCTGC GACTGCTTTT CTTATAGGTG ATAAGTTGAT
    TGTTGCTAAC GTTGGTGATT CTAGAGTTGT AGCGTCAAGA AATGGTTCAG
    CTGTTCCACT CTCTGATGAT CATAAACCTG ATAGATCAGA TGAGCGACAA
    CGGATTGAAG ATGCTGGTGG CTTTATTATT TGGGCTGGAA CATGGCGAGT
    TGGTGGAATT CTTGCGGTCT CTCGGGCTTT TGGAGATAAG CAACTTAAGC
    CATATGTGAT TGCGGAGCCA GAAATTCAGG AGGAGGATAT AAGCACATTG
    GAGTTTATTG TTGTTGCTAG TGATGGACTG TGGAATGTGT TGTCAAACAA
    GGATGCCGTG GCAATAGTAC GAGACATTTC AGATGCGGAA ACAGCAGCAA
    GAAAGCTTGT GCAAGAAGGT TACGCACGGG GTAGCTGCGA CAATATCACT
    TGCATTGTTG TACGATTCGA GGTTTCTTGA GCAAGAACCA AATTCATATT
    GTTCTTGTTC TATGAATGTA CCATCTTCAG CTGTTGAATA CACTAACATA
    TTTGGGTTAT ACAATTTTAT AAAAGAAAGA TATATTTAAA AAAAAAAAAA
    AAA

    Gene models with high sequence identity

    1. AT1G43900.1 [+] show detail - Protein phosphatase 2C family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PROTEIN PHOSPHATASE 2C EPSILON 7.9e-122
    HMMPanther Protein phosphatase 2C 7.9e-122
    PatternScan Protein phosphatase 2C, manganese/magnesium aspartate binding site 0
    Gene3D Protein phosphatase 2C-related 3.3e-78
    HMMSmart Protein phosphatase 2C-related 4.9e-91
    HMMPfam Protein phosphatase 2C, N-terminal 1.2e-64
    superfamily Protein phosphatase 2C-related 2e-79

    See the detailed result >

    AT1G43900.1

    Model type
    Protein coding
    Short Description
    Protein phosphatase 2C family protein
    Computational Description
    Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: HOPW1-1-interacting 2 (TAIR:AT4G31750.1); Has 8097 Blast hits to 7992 proteins in 953 species: Archae - 12; Bacteria - 1506; Metazoa - 1655; Fungi - 811; Plants - 2687; Viruses - 9; Other Eukaryotes - 1417 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR