F18732

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F18732

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Original: F18732

Determination of introduced cDNA(s)

  • RAFL06-15-M19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-15-M19 - Resource: pda09419

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-15-M19 - full reading 
    GAACATTTCA TATATAAGAA GATATACAAG CCTACCAAAC ATAACAAAAC 
    ATATTTTAAA CACCAGCAAG TTTATATTGC AAAGCGTTTC ATCATGATCA 
    TGAAGATATC TATGGCTATG TGCAAACAAC CATTGCCTCC TTCGCCGACT 
    TTAGACTTCC CTCCAGCGAG ATTTGGTCCC AATATGCTAA CTCTAAACCC 
    ATACGGTCCA AAGGACAAAG TTGTGGTCAT CATGGGTGCT ACCGGGACAG 
    GCAAGTCACG ACTCTCCGTG GATATAGCCA CACGTTTTCG GGCTGAGATC 
    ATAAACTCAG ACAAGATACA AGTCCACCAA GGTCTAGACA TTGTAACCAA 
    CAAGATCACG AGCGAGGAGA GCTGCGGGGT ACCGCACCAT CTCCTCGGCG 
    TCTTGCCGCC TGAAGCCGAC TTAACCGCCG CGAATTACTG TCACATGGCG 
    AATCTCTCCA TTGAATCCGT CCTAAACCGT GGAAAGCTTC CAATCATCGT 
    TGGAGGTTCC AACTCTTACG TGGAGGCTCT AGTGGATGAC AAAGAAAACA 
    AGTTCAGGTC GAGATACGAC TGTTGTTTTC TATGGGTGGA CGTGGCACTT 
    CCCGTTTTGC ACGGGTTCGT GTCTGAGAGA GTTGACAAGA TGGTGGAGAG 
    TGGAATGGTT GAGGAAGTCA GAGAATTTTT CGACTTTTCG AACTCTGATT 
    ACTCAAGAGG GATCAAGAAA GCAATCGGAT TTCCGGAGTT TGACAGGTTT 
    TTCAGGAACG AGCAGTTCTT GAATGTGGAA GACAGAGAAG AACTGTTAAG 
    TAAAGTGTTG GAAGAAATAA AGAGGAATAC ATTTGAGTTA GCTTGTAGGC 
    AGAGAGAAAA GATCGAACGG TTGAGAAAAG TGAAGAAGTG GTCTATTCAG 
    AGAGTGGATG CGACTCCAGT CTTTACAAAG CGAAGGTCCA AGATGGATGC 
    TAACGTGGCC TGGGAGAGGC TCGTGGCTGG ACCAAGCACA GATACTGTGT 
    CGCGGTTTCT GCTGGACATT GCCAGCCGAC GACCGCTCGT GGAAGCTTCA 
    ACAGCGGTTG CGGCCGCCAT GGAACGCGAG TTGTCGCGGT GTCTAGTGGC 
    GTGATCAGTT GTAACCACGT AAAAGATAAG GGTGGATTCT GAAGAAATGT 
    GGTTAATTTA CGCCAATGGT ACTTATTGGT GATGGTGACG GGGCAATGAT 
    CCGATCAAAA TATACGAGGC TACGATGAGT GGTGGAAAAA TATAAAAAAA 
    TAAGCTACAA AAATAAAATA TGATATATAT GCATATCGTA TTATCGTATA 
    TAGTATTGTC AGATACTGAA AATTTTGGCA TAACGGTTAT TCAGTATTAT 
    CATCTACTTT TTTGGATGTA AGTGAGACTG TGAGTGGAAT GCTATATTTG 
    C

    Gene models with high sequence identity

    1. AT3G63110.1 [+] show detail - isopentenyltransferase 3
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam tRNA isopentenyltransferase 1.7e-18
    HMMPfam tRNA isopentenyltransferase 0.000000000012
    HMMPanther CYTOKININ SYNTHASE 5.6e-132
    HMMPanther tRNA isopentenyltransferase 5.6e-132
    superfamily P-loop containing nucleoside triphosphate hyd 0.000000000000013

    See the detailed result >

    AT3G63110.1

    Model type
    Protein coding
    Short Description
    isopentenyltransferase 3
    Curator Summary
    Encodes cytokinin synthase involved in cytokinin biosynthesis. IPT3 subcellular localization is modulated by farnesylation- when farnesylated it is localized to the nucleus, otherwise to the chloroplast.
    Computational Description
    isopentenyltransferase 3 (IPT3); CONTAINS InterPro DOMAIN/s: tRNA isopentenyltransferase (InterPro:IPR002627); BEST Arabidopsis thaliana protein match is: isopentenyltransferase 5 (TAIR:AT5G19040.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR