F18749

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F18749

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F18749

Determination of introduced cDNA(s)

  • RAFL09-43-L12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-43-L12 - Resource: pda08381

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-43-L12 - full reading 
    AGAACTTCCA AATTGTAAAA CTTCGGCTCC CACAGGGGAA ACAAAGCGAC 
    CGTTTTGCTC ATCATTATTT ATAGCCGCCG GCGAATTGAT CGGTAAAAAA 
    AAAAACTTCC GACGTTTCTA CAAAGTTGCG AATCATGATC TACCTCTCTA 
    GACGCTCACT CTCTTCTCTT CTCCGATCCG GTTTCAATCT CCGCGGCGAT 
    CTTACAGCAG CAGCTGTCTC TTGTTCCTCT CTCTTCTCCG ACGCGGACGG 
    TGGGATTAAG AAGTTACACT CGCGAGCTGG GAATGCAGTG TTATGGAGAA 
    ATAGTCAGCT ATGTAGTTCT CAAGGAAGCT TTTTTGGACG AGGAGGACAA 
    GTCTCAGGTT CTGTGTTTCG ATGTTTCTGC AGTGGTAGTG ATACTTCTCC 
    TCCTAGCTTG GATCGGAAGT TTTTGGCTCA GCTATGGGTT GCAGATAAGA 
    AAAAGCTAAA GGCTATGGAA AAGCGATATA AGAAAGCTTC TAAGCATAGG 
    AACTACACTG AAAATGATGG ATTTGATGTC CATTTTGAAA CTGTTGAGCC 
    TACAGTGGAG CAACCACCGG TTAGCCAGTC TATGTCTGGT CTTCTGAAGC 
    CTAAAACTTC TGATGAGGCC AAAATTGCAA CTCTGCTTGC ACGATCGAAT 
    TTGCTGGTTA CAAGAGATAT TGAATGGGCA AATCTGGTTC TTGGTTTTGA 
    ACAGGAAAAT CGCTATATTG TAGTAGATGT TTGCTATCCT GAGGCACCTG 
    TGGGGTCTAT CCGAGAACAA AGCAATTTAC TGGCGCGGCA GCTGCTTCGT 
    ACCCGGCGCC CATTTGTTGC TTCCATAACT GATGCTTTGG GTAATGAGCT 
    TTTCCGGGTT CGTCGACCTT TCTGGTGGCT CACAAGTTCA ATATATGCTG 
    AAATTGATGG AGAGGAAATT GGTGTTGTTC ATCGACGATG GCATCTATGG 
    AGAAGAATTT ATGATTTATA CCTGGGGAAC AACCAGTTTG CAGTGGTAGA 
    AAATCCTGGG TTTTGGAATT GGACATTTAC AGTGAAGGAT GCTGATGGGG 
    AAGTCTTAGC CCAAATAGAT CGTGATTGGA GAGGTTTTGG CTTTGAGATA 
    TTCACAGATG CTGGGCAGTA CGTGATCCGA TTTGGAAAAG CTGATGCTGC 
    AGCCAAGACC GGCCCTGCGA CACTGGTAGA AGAGTTAGAA GTGAAACGGC 
    CATTGACTTT GTCAGAAAGA GCTGTTGTCC TTACGCTTGC GATTTCACTA 
    GATAATGATT ACTTTTCAAG ACATGGTGGC TGGGGAATCC CATTCATGGC 
    GGTGGGTGAG TAGTAGGTAG GATTCAGTTT TTCACACTCT CTGTTTCGGG 
    TAATGACTTG TGTGGCTATC TGAAAACTTG AGCCTTGTGT TGTGTTTCTC 
    TGTCTCGTTT CAACTCATAC GAGTATGCAG AGTAAATGTA ACTTTAAATC 
    ATTCGACATA AATCGGTTTA TATAATGATG ATTATTGTGG AT

    Gene models with high sequence identity

    1. AT2G04940.1 [+] show detail - scramblase-related
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Scramblase 1.1e-69
    HMMPanther UNCHARACTERIZED 2.1e-223
    HMMPanther Scramblase 2.1e-223

    See the detailed result >

    AT2G04940.1

    Model type
    Protein coding
    Short Description
    scramblase-related
    Computational Description
    scramblase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Scramblase (InterPro:IPR005552); Has 427 Blast hits to 416 proteins in 142 species: Archae - 0; Bacteria - 29; Metazoa - 228; Fungi - 113; Plants - 38; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR