F18816

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F18816

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F18816

Determination of introduced cDNA(s)

  • RAFL06-07-H09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-07-H09 - Resource: pda07503

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-07-H09 - full reading
    ATCTTCTCCA CCAGAATTTG TTTTAGGCTC TCCTTCTTCT GTTTCTTTTT 
    CTCCCAAAGA AACAATTAGA TATGGAGAAC CTTACCCTAG TTTCTTGCTC
    AGCTTCTTCT CCAAAGCTGT TAATTGGATG CAATTTCACT TCCTCGCTGA
    AAAACCCTAC TGGGTTTTCT CGTCGGACTC CTAATATTGT CCTCCGGTGT
    TCCAAAATAT CTGCCTCTGC TCAATCTCAA TCTCCCTCTT CGCGTCCGGA
    GAACACTGGA GAAATCGTGG TTGTGAAACA GAGAAGCAAA GCTTTTGCAA
    GTATATTTTC TTCGAGTCGT GATCAACAGA CAACTTCTGT TGCTTCCCCT
    AGTGTGCCTG TGCCACCACC ATCTTCATCA ACCATAGGAT CACCACTTTT
    CTGGATTGGT GTTGGTGTTG GTCTATCAGC TTTGTTCTCA TATGTAACTT
    CAAATTTAAA GAAATATGCA ATGCAAACAG CTATGAAGAC GATGATGAAC
    CAAATGAATA CGCAAAATAG CCAGTTTAAT AATTCTGGAT TCCCATCAGG
    ATCACCTTTT CCGTTTCCAT TTCCTCCTCA AACAAGTCCT GCTTCCTCGC
    CATTCCAATC TCAATCCCAG TCTTCAGGTG CTACCGTTGA TGTGACAGCG
    ACAAAAGTAG AGACACCTCC TTCAACTAAA CCGAAACCTA CACCTGCAAA
    GGATATAGAG GTGGATAAGC CAAGTGTTGT CTTAGAGGCA AGCAAAGAGA
    AGAAAGAAGA AAAGAACTAT GCCTTTGAAG ACATTTCACC CGAGGAAACC
    ACAAAAGAAA GCCCATTTAG CAACTATGCA GAAGTCTCTG AAACTAATTC
    CCCCAAAGAA ACTCGCTTGT TTGAGGATGT CTTGCAAAAT GGAGCTGGTC
    CGGCAAATGG TGCCACTGCT TCAGAGGTTT TTCAATCTTT GGGTGGTGGG
    AAAGGAGGGC CGGGTTTATC TGTAGAAGCT TTAGAGAAAA TGATGGAAGA
    TCCAACAGTC CAGAAGATGG TTTACCCATA CTTGCCTGAG GAGATGAGGA
    ACCCAGAAAC TTTCAAATGG ATGCTTAAAA ATCCTCAGTA CCGTCAACAA
    CTACAGGACA TGTTGAATAA TATGAGTGGG AGTGGTGAAT GGGACAAGCG
    AATGACAGAT ACATTGAAGA ATTTTGACCT GAATAGTCCT GAAGTGAAGC
    AACAATTCAA TCAAATAGGA CTAACTCCAG AAGAAGTCAT ATCTAAGATC
    ATGGAGAACC CTGATGTTGC CATGGCATTC CAGAATCCTA GAGTCCAAGC
    AGCGTTAATG GAATGCTCAG AGAACCCAAT GAACATCATG AAGTACCAAA
    ACGACAAAGA GGTAATGGAT GTGTTCAACA AGATATCGCA GCTCTTCCCA
    GGAATGACGG GTTGAAAAAG CTCACGTCTT TGGTTCTATC AAAAATGTCA
    CATTGTCTTT AGCTTTTTGT AGGGAGAAAA AAATGTTTTT TTTTTTTTGC
    AAAGAGTCTT CAGTTTTGGT CAGATCAGAG AATTGTGTAC CATGTTAATC
    TTAAACGCGG TCGGGAATTG GAGTCGTGTG AAAACGCCGC TGCTGTTGTT
    TGGTATGAAT ATTATACAAT AGAATTTGTT GTCTTAC

    Gene models with high sequence identity

    1. AT5G16620.1 [+] show detail - hydroxyproline-rich glycoprotein family protein
      E-value: 0; Score: 99.88

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther HSC70-INTERACTING PROTEIN 1.2e-12
    HMMPanther TPR REPEAT CONTAINING PROTEIN 1.2e-12
    HMMPfam 26S proteasome complex ubiquitin receptor, subunit Rpn13 8.2e-07
    HMMSmart Heat shock chaperonin-binding 0.0017
    HMMSmart Heat shock chaperonin-binding 3.4e-08

    See the detailed result >

    AT5G16620.1

    Model type
    Protein coding
    Short Description
    hydroxyproline-rich glycoprotein family protein
    Curator Summary
    chloroplast protein import (Tic40)
    Computational Description
    TIC40; INVOLVED IN: protein import into chloroplast stroma, chloroplast organization; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636), 26S proteasome complex ubiquitin receptor, subunit Rpn13 (InterPro:IPR006773); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR