F18817

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F18817

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F18817

Determination of introduced cDNA(s)

  • RAFL05-17-F20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-17-F20 - Resource: pda17112

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-17-F20 - full reading 
    GGAGAAGAGA TCGAGAGAAG AATAGTTTGA TCATCTTGTG AGAAAAATAA 
    TGGCTGCTTC AGTGATGCTA TCTTCGGTGA CATTGAAACC AGCTGGTTTC 
    ACGGTGGAGA AGACGGCGGC TAGAGGATTA CCGTCGCTCA CAAGAGCTCG 
    TCCCTCCTTC AAAATTGTCG CCAGTGGCGT CAAGAAGATC AAGACCGACA 
    AGCCCTTCGG AATTAACGGC AGCATGGACT TGAGGGACGG CGTCGACGCC 
    TCCGGCAGAA AGGGCAAGGG ATACGGTGTT TACAAGTACG TCGACAAGTA 
    TGGAGCTAAC GTCGATGGAT ACAGTCCTAT TTACAACGAG AACGAGTGGT 
    CAGCGAGTGG TGACGTGTAC AAGGGAGGAG TCACCGGATT GGCAATTTGG 
    GCGGTAACTC TCGCCGGAAT TCTTGCCGGA GGTGCTCTTC TTGTGTACAA 
    CACAAGTGCT TTGGCTCAGT AAATCTTAAA GTTGTTAGCG CATGTGTAAT 
    CATGTTTCTA TAAATGTTTC TGTGTTGTTC TCTTTCTCTC TAATGTTGTA 
    AAACTCAGAC ATACTTTGAA TTTATAAGAC TTCTAGTGTT TGTACAAAAA 
    AAA

    Gene models with high sequence identity

    1. AT1G79040.1 [+] show detail - photosystem II subunit R
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT1G79040.1

    Model type
    Protein coding
    Short Description
    photosystem II subunit R
    Curator Summary
    Encodes for the 10 kDa PsbR subunit of photosystem II (PSII). This subunit appears to be involved in the stable assembly of PSII, particularly that of the oxygen-evolving complex subunit PsbP. Mutants defective in this gene have reduced amounts of subunits PsbP and PsbQ in PSII. In turn, assembly of PsbR is dependent on the presence of PsbJ.
    Computational Description
    photosystem II subunit R (PSBR); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosystem II oxygen evolving complex assembly, photosynthesis, response to light intensity; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, photosystem II; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II protein PsbR (InterPro:IPR006814); Has 134 Blast hits to 134 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR