F18829

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F18829

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F18829

Determination of introduced cDNA(s)

  • RAFL06-69-H14 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-69-H14 - Resource: pda07632

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-69-H14 - full reading 
    GAAGGAAGCT CTCATCTTTT CACTCAGATC ACGTTCCCTG GGCTTATTCG 
    CTTGTATCTG TTGATATACA AGATGGCATC TGCGACTCTG AGAAGGCGGC 
    TTCATCACGG TGATGTAGAT GGGAGGAAGT ATGAACGCTA TGATGCAACA 
    GACTCTGAAA CTTTAAGTGA ACCCTTGTTA GGAAGTAGTA GTACTGATAA 
    TAGTAGAAAT GAGTACATTG AGGAGCGTAC TCTGGAGGAT ATTTGGGAAG 
    AAGAACGGAA GAGACAGCAA GTTCACTGGA CGTTAATCTT TTCTCAGTTG 
    ATTGCACAGT GGGCTCAGTG GATAGCCAAA ATAGTCTTTG GATCTGGCTC 
    ACTTGTTGGG AGGTTTCTTT CTCTGCCTAC ATTTGGTCAA ATAGGTACTG 
    GTGGGAGGCT TCTGCCACCA CCTCTTAGTA TGTTGCAGGA AGAAAGGCTG 
    AGAAATATTA AGCGAAGAAT AGAAATCCCA TTTGATGGAT CTCGAATGGA 
    GCATCAAGAT GCTCTTAGAC AACTATGGAG GCTAGCTTAT CCACAGAGAG 
    AACTACCACC TCTTAAATCT GAACTCTGGA AGGAAATGGG TTGGCAAGGA 
    ACAGACCCTT CAACAGATTT TCGAGGTGGA GGGTATATAT CACTGGAGAA 
    TCTAATCTTC TTTGCGAAGA CCTATCCGGA ATCATTCCAG AGATTGTTAC 
    ATAAACAAGA TGGAACTAGA GCGGAATGGG AATATCCTTT CGCGGTGGCT 
    GGCATCAATA TCTCATTCAT GCTGGCACAA ATGTTAGATC TTCAATCAGG 
    TAAACCATCA ACAATAGCCG GGATAAGATT CTTGGGATTT CTGGAAGAAG 
    ACGAAATGGC ATTCGATAAT CTCTACTGTA TAGCTTTCCA AATGATGGAT 
    GCACAATGGC TTGCTAGACG AGCTTCTTAC ATGGAATTCA ATGACGTCCT 
    GAAATCGACG AGAGCACAAT TGGAACGTGA GCTGGCACTG GATGATGTTT 
    CAAGCATCAC AGACTTGCCT GCTTTCAATC TTTTGTACAA ATAAATTGTT 
    AAATTTCCTA CAATTTCTAT CTGTATTTAG ATAATAATTA TCTGAGAAAT 
    TCAGTGTAAC AAATAATCAG TTTTTGCTGA AATTGCTCGG CAAGTATAAT 
    TTCATCAGAA GATTTAATGA AAAAAAAAAA AAAAA

    Gene models with high sequence identity

    1. AT3G03610.1 [+] show detail - ELMO/CED-12 family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Engulfment/cell motility, ELMO 29.913
    HMMPanther CELL MOTILITY PROTEIN RELATED 1.3e-146
    HMMPanther ENGULFMENT AND CELL MOTILITY 1.3e-146
    HMMPfam Engulfment/cell motility, ELMO 3e-51

    See the detailed result >

    AT3G03610.1

    Model type
    Protein coding
    Short Description
    ELMO/CED-12 family protein
    Computational Description
    ELMO/CED-12 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: phagocytosis; LOCATED IN: cytoskeleton; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Engulfment/cell motility, ELMO (InterPro:IPR006816); BEST Arabidopsis thaliana protein match is: ELMO/CED-12 family protein (TAIR:AT1G03620.1); Has 825 Blast hits to 825 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 481; Fungi - 44; Plants - 173; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR