F18844

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F18844

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F18844

Determination of introduced cDNA(s)

  • RAFL06-07-B07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-07-B07 - Resource: pda09362

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-07-B07 - full reading 
    ATCTGCGTCA TTCCTAAGCT CACTATACTC TCTGTTTAAA AAAACCTATC 
    TCTCTCTCTC TCTCTCGCCG CCTTCCTCTC ACCCTCTTCG CATAGCTTCA 
    CTTTCGCCGA TGGCTCTACC TAACCAGCAA ACCGTGGATT ACCCTAGCTT 
    CAAGCTCGTT ATCGTTGGCG ATGGAGGCAC AGGGAAGACC ACATTTGTAA 
    AGAGACATCT TACTGGAGAG TTTGAGAAGA AGTATGAACC CACTATTGGT 
    GTTGAGGTTC ATCCTCTTGA TTTCTTCACT AACTGTGGCA AGATCCGTTT 
    CTACTGTTGG GATACTGCTG GCCAAGAGAA ATTTGGTGGT CTTAGGGAAG 
    GTTACTACAT CCATGGACAA TGTGCTATCA TCATGTTTGA TGTCACAGCA 
    CGACTGACAT ACAAGAATGT TCCAACATGG CACCGTGATC TTTGCAGGGT 
    TTGTGAAAAC ATCCCAATTG TTCTTTGTGG GAATAAAGTT GATGTGAAGA 
    ACAGGCAAGT CAAGGCCAAG CAGGTAACAT TCCACAGGAA GAAGAACCTC 
    CAGTATTACG AGATATCTGC CAAGAGCAAC TACAACTTCG AGAAGCCATT 
    CTTGTACCTT GCTAGAAAGC TCGCCGGGGA CGCTAATCTT CACTTTGTGG 
    AATCACCTGC CCTTGCTCCC CCGGAAGTTC AAATCGACTT GGCTGCTCAG 
    CAGCAGCATG AGGCGGAGCT TGCAGCAGCA GCAAGTCAGC CACTTCCTGA 
    TGACGATGAT GACACCTTCG AGTAGAGAAA GAGAGATGTG ATCTGTCACT 
    GATTACCCGT TAGGGCTTGT CTGAACTTTT TTTTGTTCAT GGTGCTATTT 
    TTATGTGTCC GTACTTTGAA ATGAATCGAT GACATTAGTA AAAAAAAAAA 
    AAAAAAAAAA AAAAAA

    Gene models with high sequence identity

    1. AT5G55190.1 [+] show detail - RAN GTPase 3
      E-value: 0; Score: 99.89

     

    InterPro Scan Digest

    Program Description E-value
    superfamily P-loop containing nucleoside triphosphate hyd 1.1e-51
    HMMTigr Small GTP-binding protein 1.8e-21
    HMMSmart Ras small GTPase, Ras type 8e-18
    HMMSmart Ras small GTPase, Rab type 7.3e-28
    HMMSmart Small GTPase, Rho type 1.3e-08
    HMMSmart Ran GTPase 1.3e-166
    HMMPfam Ras 6e-50
    Gene3D no description 8.4e-49
    HMMPanther GTP-BINDING NUCLEAR PROTEIN RAN 1.1e-60
    HMMPanther RAS-RELATED GTPASE 1.1e-60
    ProfileScan Ran GTPase 29.886
    FPrintScan Ran GTPase 4.5e-60
    FPrintScan Ran GTPase 4.5e-60
    FPrintScan Ran GTPase 4.5e-60
    FPrintScan Ran GTPase 4.5e-60
    FPrintScan Ran GTPase 4.5e-60

    See the detailed result >

    AT5G55190.1

    Model type
    Protein coding
    Short Description
    RAN GTPase 3
    Curator Summary
    A member of RAN GTPase gene family. Encodes a small soluble GTP-binding protein. Likely to be involved in nuclear translocation of proteins. May also be involved in cell cycle progression.
    Computational Description
    RAN GTPase 3 (RAN3); FUNCTIONS IN: protein binding, GTP binding, GTPase activity; INVOLVED IN: protein import into nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ran GTPase (InterPro:IPR002041), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753); BEST Arabidopsis thaliana protein match is: RAS-related nuclear protein-1 (TAIR:AT5G20010.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR