F18921

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F18921

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F18921

Determination of introduced cDNA(s)

  • RAFL14-70-M19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL14-70-M19 - Resource: pda18962

    full reading [+] show sequence

    Nucleotide sequence: RAFL14-70-M19 - full reading 
    CTCCTTTGCA CTCCATTTTT ATTCTCGATT CTCTTCTCTC CCGATAAAGA 
    AGCTCTCGCT TTGTGTTGTC CGTCCTTCTT CCAGGTTTTC TCGTCTCTGA 
    CGCATGGCTT CTAAGAGGAT CTTGAAGGAG CTCAAGGATC TGCAGAAGGA 
    TCCTCCTTCA AACTGCAGCG CTGGTCCGGT GGCTGAGGAC ATGTTCCATT 
    GGCAAGCCAC TATCATGGGA CCTCCTGAAA GTCCGTATGC CGGAGGAGTG 
    TTTTTGGTTT CTATTCATTT CCCTCCGGAT TATCCTTTCA AGCCACCAAA 
    GGTGTCTTTT AAGACTAAGG TGTACCATCC AAACATCAAT AGCAATGGAA 
    GTATTTGCCT TGATATTTTG AAAGAGCAAT GGAGCCCTGC TCTTACTATC 
    TCTAAGGTTC TGTTGTCGAT TTGCTCGCTG TTGACTGACC CAAACCCAGA 
    TGATCCTCTT GTGCCGGAGA TAGCTCACAT GTACAAGACA GATAGATCCA 
    AGTACGAGTC AACTGCGAGA AGCTGGACAC AAAAGTACGC AATGGGTTGA 
    TGATATAAGA CAAAGCAAAG GATATGTTAT TGCGCATCGG AATAAAATAA 
    TAACTTAAAA AAAATGCACT TGTTTGGTTT ATCAAACGTT AGCAAGTATC 
    GAACAACTTA GCTGCTCTTA CTCCTCTTCT GTTCTGATCA CTATAAACTA 
    GTATTAATTT CAAAAAAAAA A

    Gene models with high sequence identity

    1. AT3G08690.1 [+] show detail - ubiquitin-conjugating enzyme 11
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Ubiquitin-conjugating enzyme, E2 0
    Gene3D Ubiquitin-conjugating enzyme/RWD-like 6.5e-61
    Coil coiled-coil 0
    HMMPfam Ubiquitin-conjugating enzyme, E2 1.6e-53
    ProfileScan Ubiquitin-conjugating enzyme, E2 48.796
    HMMSmart Ubiquitin-conjugating enzyme, E2 1.4e-80
    superfamily Ubiquitin-conjugating enzyme/RWD-like 9.1e-69
    HMMPanther UBIQUITIN-CONJUGATING ENZYME E2 4.2e-110
    HMMPanther UBIQUITIN-CONJUGATING ENZYME E2 4.2e-110

    See the detailed result >

    AT3G08690.1

    Model type
    Protein coding
    Short Description
    ubiquitin-conjugating enzyme 11
    Computational Description
    ubiquitin-conjugating enzyme 11 (UBC11); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 10 (TAIR:AT5G53300.4); Has 10847 Blast hits to 10798 proteins in 402 species: Archae - 0; Bacteria - 4; Metazoa - 4764; Fungi - 2349; Plants - 1956; Viruses - 26; Other Eukaryotes - 1748 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR