F18940

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F18940

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F18940

Determination of introduced cDNA(s)

  • RAFL06-84-B13 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-84-B13 - Resource: pda03868

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-84-B13 - full reading 
    GACGTGACTC TTCTCTCTCT TCCTCTCCAT CAATGGCGAC CACAAACTCT 
    CTCCACCACC ACCACCACTC CTCTCCTTCT TACACACACC ACCGCAACAA 
    TCTCCATTGC CAATCTCACT TCGGACCAAC TTCTCTTTCC CTCAAACAAC 
    CCACTTCCGC CGCAACATTC TCACTAATCT GCTCTGCTTC TTCCACCTCC 
    TCCTCCACCA CCGCCGTATC TGCCGTTTCA ACCACAAACG CCTCCGCCAC 
    AACTGCCGAA ACCGCGACCA TATTCGACGT TCTGGAGAAC CATCTCGTCA 
    ATCAAAACTT CAGACAAGCC GACGAGGAGA CACGGAGATT ACTCATTCAG 
    ATATCCGGAG AAGCCGCCGT GAAACGTGGC TACGTTTTCT TCTCCGAGGT 
    GAAAACAATC TCCCCCGAAG ATCTTCAAGC TATCGACAAT CTATGGATTA 
    AACACAGTGA TGGTAGATTC GGATACAGCG TGCAACGCAA AATCTGGTTA 
    AAAGTGAAGA AAGATTTCAC AAGATTCTTC GTTAAAGTTG AGTGGATGAA 
    GCTTCTTGAC ACAGAGGTTG TTCAATACAA TTACAGAGCG TTTCCTGACG 
    AATTCAAGTG GGAGCTTAAC GATGAAACGC CTTTAGGACA CTTACCGCTC 
    ACAAACGCCT TGAGAGGAAC GCAGCTTCTG AAATGCGTTT TAAGCCATCC 
    TGCGTTTGCG ACAGCTGATG ATAACAGTGG AGAAACAGAA GACGAGCTTA 
    ACAGAGGTGT TGCGGTGGCT AAGGAACAGG CAGAAGTAGG AGCAGACAAA 
    AGAGTGTTTA AAACAAATTA CAGCTTCTGA TGTCTTTCTC CTTCTTTTTT 
    TTTTTTTTTA ATATTGATTT TCTGATATTG TGAAAGTATA AACAAATCTC 
    TGTAATCATA TCATTAATTA AATCGGATTT CTCTTCAATG TCAGTTCCAT 
    TGTGATTATG GATGTATGAA CAAAGCCAGA TCATTAGTTA ATGAACAAAA 
    AAAAAAAAAA AA

    Gene models with high sequence identity

    1. AT3G59400.1 [+] show detail - enzyme binding;tetrapyrrole binding
      E-value: 0; Score: 99.80

     

    InterPro Scan Digest

    See the detailed result >

    AT3G59400.1

    Model type
    Protein coding
    Short Description
    enzyme binding;tetrapyrrole binding
    Curator Summary
    GUN, genomes uncoupled, is necessary for coupling the expression of some nuclear genes to the functional state of the chloroplast. Binds to the magnesium chelatase complex and promotes formation of the substrate,a tetrapyrrole signaling molecule. Porphyrin-binding protein that enhances the activity of Mg-chelatase. Although required for chlorophyll accumulation under normal growth conditions, GUN4 is not essential for chlorophyll synthesis.
    Computational Description
    GENOMES UNCOUPLED 4 (GUN4); FUNCTIONS IN: tetrapyrrole binding, enzyme binding; INVOLVED IN: chlorophyll biosynthetic process, chloroplast-nucleus signaling pathway, positive regulation of catalytic activity; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GUN4-like (InterPro:IPR008629); Has 685 Blast hits to 680 proteins in 101 species: Archae - 0; Bacteria - 474; Metazoa - 4; Fungi - 2; Plants - 53; Viruses - 0; Other Eukaryotes - 152 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR