F18941

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F18941

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Others)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F18941

Determination of introduced cDNA(s)

  • RAFL04-15-L21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-15-L21 - Resource: pda00577

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-15-L21 - full reading 
    GTGAATTCGC TCGGCGGCAT AAAAGAGAGT AAGAAGAGGA AGACGAGAGT 
    TACAAGGATT GAAAATGAAG GGACGTCAAG GAGAGAGAGT TAGATTGTAT 
    GTTCGTGGAA CAGTCCTCGG CTACAAGAGG TCCAAGTCGA ACCAATATCC 
    CAACACTTCT CTCATCCAGA TTGAAGGTGT GAACACTCAA GAGGAGGTCA 
    ATTGGTACAA GGGTAAGCGT TTGGCTTACA TCTACAAGGC AAAGACAAAG 
    AAGAACGGTT CTCACTACCG TTGCATTTGG GGCAAAGTCA CTAGGCCTCA 
    TGGTAACAGC GGTGTTGTCC GTTCTAAGTT CACTTCAAAC CTACCACCCA 
    AGTCAATGGG AGCTAGAGTC AGAGTCTTCA TGTACCCTAG CAACATATGA 
    GGAGGATAGA TTTCAAGAAG TATCGGAAGG AATCGCCATT ATCATTTCTC 
    AGGAGCTGTA GTTTATCTAT TCACTTTTGT TCTAAACTCT CTGTTGGTTT 
    TGATTTTATC TTTAGACGAA GTAAAACATT TTTCTTCTTG AGATAATATT 
    AATGGAACTT

    Gene models with high sequence identity

    1. AT1G41880.1 [+] show detail - Ribosomal protein L35Ae family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    BlastProDom Ribosomal protein L35Ae 3e-48
    HMMPfam Ribosomal protein L35Ae 4.2e-43
    PatternScan Ribosomal protein L35Ae, conserved site 0
    HMMPanther Ribosomal protein L35Ae 5.5e-67

    See the detailed result >

    AT1G41880.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein L35Ae family protein
    Computational Description
    Ribosomal protein L35Ae family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit, membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein L35Ae (InterPro:IPR001780), Ribosomal protein L35Ae, conserved site (InterPro:IPR018266); BEST Arabidopsis thaliana protein match is: Ribosomal protein L35Ae family protein (TAIR:AT3G55750.1); Has 766 Blast hits to 766 proteins in 257 species: Archae - 25; Bacteria - 0; Metazoa - 323; Fungi - 146; Plants - 149; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR